Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   2.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   3.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   5.0  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   8.8  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   8.8  

>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 LLSTYFIRKIGTRRAFGIEGPMHRKIGTNAPDVLTFRLRRLQ 239
           LL + F R +    AFGI G  +RK+ T   D L  R  + Q
Sbjct: 231 LLKSTFARMVRILPAFGIGGVTNRKLRTTYLDSLQQRTMKKQ 272


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 69  LHDVIPSPWEPIVNILLST 125
           LH ++PSP+EP +++  ST
Sbjct: 561 LHTIVPSPYEPPLSVTPST 579


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 227  PTTSICFYLLFFLCFARRTSRNLVLPSVSAML 322
            P T I   L  FLCF ++TS+ + L S + +L
Sbjct: 1087 PATLIDSALDVFLCFVQKTSKFISLDSFNTIL 1118


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  NSNFAGLIFITRCYSFTMG 97
           N+N +G IF++ CY + +G
Sbjct: 404 NTNVSGGIFMSTCYKYVLG 422


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 263 KKKEDKNRLKSSEPKG*DVRCICTYLAMHRPL---NPEGATGT 144
           KKKE K  LK    KG   +CI      H+PL    P  A+GT
Sbjct: 270 KKKEQKWTLKFESDKGTSTQCI-----THQPLPGSTPSFASGT 307


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 33  ITQILILRV*FLLHDVIPSPWEPIVNILLSTYFI 134
           +T  ++L + F+LHD   S W+ +V IL    ++
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMILYYLLYV 253


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 308 LKVKLDCGSFAWRNIKKKEDKNRL 237
           LK+ L      W N+KK+ DK R+
Sbjct: 4   LKIVLFLSLVIWFNLKKRTDKKRI 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,965
Number of Sequences: 5004
Number of extensions: 41255
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)