Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0577 + 4728479-4728579,4728847-4729093                           29   2.2  
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710     29   2.9  
06_02_0256 + 13528331-13528765                                         28   3.8  
02_02_0566 + 11567415-11567843                                         28   5.1  
11_06_0181 + 20985960-20987825,20987904-20989169                       27   8.8  
10_08_0965 + 21915842-21916906                                         27   8.8  
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249...    27   8.8  
04_01_0149 + 1723712-1723799,1725608-1725775,1726312-1726374,172...    27   8.8  

>12_01_0577 + 4728479-4728579,4728847-4729093
          Length = 115

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = -3

Query: 335 NCEEKAWRKLKVK---LDCGSFAWRNIKKKEDKNRLKSSEPKG*DVRCICTYLAMHRP 171
           N    +WR +K     L+     W NI ++  K   K   PKG + + +C      +P
Sbjct: 46  NTSSSSWRSIKRAKHLLERRPKPWSNIARRSTKGEAKDPRPKGDEEKGLCQQARRTKP 103


>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
          Length = 640

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 326 EKAWRKLKVKLDCGSFAWRNI 264
           + AWR+ +   D GSF WR+I
Sbjct: 514 DSAWRRARSPCDGGSFGWRSI 534


>06_02_0256 + 13528331-13528765
          Length = 144

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 GTRRAFGIEGPMHRKIGTNAPDVLTFRLRRLQ 239
           GT+R   I G MH+K+   A D++   LR  Q
Sbjct: 54  GTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQ 85


>02_02_0566 + 11567415-11567843
          Length = 142

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 GTRRAFGIEGPMHRKIGTNAPDVLTFRLRRLQ 239
           GT+R   I G MH+K+   A D++   LR  Q
Sbjct: 54  GTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85


>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 329 EEKAWRKLKVKLDCGSFAWRNIKKKEDKN 243
           +EK W +  V + CG+F  +N++ K ++N
Sbjct: 883 QEKLWLEHDVPVSCGTFEIQNMETKFNEN 911


>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 350 GFNPA*FIVILIIISKLFEHFTFTSLHIYINELLFVSLAKTRGGARYPIRPIVSR 514
           G +P+  I+ +I++  L       S+H +I  L   S A     +  P+ P+V R
Sbjct: 29  GISPSILIIAVIVVVMLLAS---VSIHYFIRHLCRRSSASAAASSSAPVLPVVVR 80


>05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,
            2490996-2491085,2491926-2492061,2492159-2492418,
            2493448-2493846,2494482-2494661,2494728-2494922,
            2496614-2496678,2497186-2497321,2497442-2497483,
            2498351-2498689
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 296  LDCGSFAWRNIKKKEDKNRLKSSEPKG 216
            L  GSF W+ +++K   +   SS+ KG
Sbjct: 1057 LQGGSFTWKTLRRKRSSHFSNSSDSKG 1083


>04_01_0149 +
           1723712-1723799,1725608-1725775,1726312-1726374,
           1726511-1726905,1727331-1727502,1727598-1728130
          Length = 472

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 413 TFTSLHIYINELLFVSLAKTRGGARYPIRPIVSR 514
           TFT+ H      LF SLA   GGA Y   PI  R
Sbjct: 428 TFTTTHKVQGNYLFGSLAWHDGGAHYVKIPIAVR 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,131
Number of Sequences: 37544
Number of extensions: 253909
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)