Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42067| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     27   6.9  
SB_59632| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_40205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_41308| Best HMM Match : rve (HMM E-Value=6e-12)                     27   9.1  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   9.1  
SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)                27   9.1  

>SB_42067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K+  G++AWR +  K
Sbjct: 215 AWRQVNIKIWLGAYAWRQVDIK 236



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K   G++AWR +  K
Sbjct: 229 AWRQVDIKRWLGAYAWRQVNIK 250



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K   G++AWR +  K
Sbjct: 285 AWRQVDIKRWLGAYAWRQVNIK 306


>SB_17037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K+  G++AWR +  K
Sbjct: 663 AWRQVNIKIWLGAYAWRQVDIK 684



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K   G++AWR +  K
Sbjct: 579 AWRQVNIKRCLGAYAWRQVDMK 600



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR+L +K   G++AWR +  K
Sbjct: 691 AWRQLDIKKCLGAYAWRQVDIK 712



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K   G++AWR +  K
Sbjct: 509 AWRQVNIKRWLGAYAWRQVNIK 530



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K+  G +AWR +  K
Sbjct: 649 AWRQVDIKMWLGVYAWRQVNIK 670



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 320 AWRKLKVKLDCGSFAWRNIKKK 255
           AWR++ +K   G++AWR +  K
Sbjct: 565 AWRQVDIKRWLGAYAWRQVNIK 586


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 302 VKLDCGSFAWRNIKKKEDKNRLKSSEPKG*DVRC 201
           ++ DC +F   N  K E+K RL  SE    + RC
Sbjct: 412 IRADCTNFPPPNSSKLEEKLRLSESEKNDAEQRC 445


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 353 NHKVSSNCEEKAWRKLKVKLDCGSFAWRNIKKKEDKNRLKSSEPKG*DVRCICTYLAMHR 174
           NH++++N E   ++ LK  +   ++ W   K  + K +++SS P   D +    ++    
Sbjct: 162 NHEIATNYECFNYQVLKSFVAAKNYVWYGFKGNKAK-KIRSSCPSKSDCQ---VWINSTH 217

Query: 173 PLNPEG 156
           PL P+G
Sbjct: 218 PLRPQG 223


>SB_59632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 196 VPILRCIGPSIPKARRVPIFLMKYVLNKMF 107
           +P+ RC G   PK+  +P  ++KY+L+ +F
Sbjct: 184 IPVGRC-GRKSPKSISIPKIVLKYLLSSIF 212


>SB_40205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 29  NNYANSNFAGLIFITRC 79
           NNY N +FAG +++ RC
Sbjct: 102 NNYDNKSFAGRLYVGRC 118


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 346 LWF*SCLIYCHFNYYFQIIRTLHLHFTSHI 435
           +W     + CH NY + +I   H+ +  H+
Sbjct: 121 IWLFHVSLLCHVNYMYHVIWLFHVSWLCHV 150


>SB_41308| Best HMM Match : rve (HMM E-Value=6e-12)
          Length = 581

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 275 WRNIKKKEDKNRLKSSEPKG*DVRCICTYL 186
           +RN+K+ E+KNR KSSEP        CTYL
Sbjct: 201 YRNMKQSENKNR-KSSEP-------TCTYL 222


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 100 GSHGEGITSCNKNQTRKIRICVII 29
           GSHG+G   C +   R + IC ++
Sbjct: 264 GSHGDGDAGCPRKLPRNLSICPVL 287


>SB_7529| Best HMM Match : Toxin_29 (HMM E-Value=0.0017)
          Length = 691

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 157 ARRVPIFLMKYVLNKMFTIGSHGEGITSCNKNQTRKIRICVIIG 26
           A    + +   V++ +F   + G+G++  NK  T K+ + ++IG
Sbjct: 398 AAATDVVVAAVVVDIIFASAASGKGVSEPNKELTMKVILLILIG 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,393
Number of Sequences: 59808
Number of extensions: 297765
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)