Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69386-2|CAA93431.1|  305|Caenorhabditis elegans Hypothetical pr...    30   0.85 
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    30   1.1  
AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine r...    29   2.0  
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    28   4.5  
X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.    27   7.9  
U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory ...    27   7.9  
U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.        27   7.9  

>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 25/86 (29%), Positives = 35/86 (40%)
 Frame = +2

Query: 233 TSICFYLLFFLCFARRTSRNLVLPSVSAMLFLHN*NLLYGFNPA*FIVILIIISKLFEHF 412
           TS    L FF    R     L   SVS M FL N +L     P   + I       F +F
Sbjct: 223 TSYFTTLFFFKTMPRLNVSILQTLSVSVMFFLMNRHLT--LIPQFLVSIKRFNFPKFNNF 280

Query: 413 TFTSLHIYINELLFVSLAKTRGGARY 490
             + +H+++N L F S+     G  +
Sbjct: 281 PSSKMHLFLNILAFASIGLLVNGEEW 306


>Z69386-2|CAA93431.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK596.2 protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 323 KAWRKLKVKLDCGSFAWRNIKKKEDKNRLKSSEPKG*DVRCI 198
           ++W  + V++ CG   WRN+ + +D    K  E K   +RC+
Sbjct: 215 ESWLYMVVEMTCGRLPWRNLTESDDVGVFK-KECKTTRLRCL 255


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 239 ICFYLLFFLCFARRTSRNLVLPSVSAMLFLHN*-NLLYGFNPA*FIVILIIISKLFEHFT 415
           ICF  ++FL F ++    ++  ++S  L L+   N++  F    FI I III        
Sbjct: 163 ICF-AIYFLNFGKQLGDEIMNITLSVYLVLYIIVNVIICFLTP-FIYIPIIIGMKKHRHL 220

Query: 416 FTSLHIYINELLFV 457
            +  HIYI+E +F+
Sbjct: 221 HSQQHIYIHEYMFI 234


>AF016449-11|AAG23992.1|  353|Caenorhabditis elegans Serpentine
           receptor, class t protein7 protein.
          Length = 353

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 TSICFYLLFFLCFARRTSRNLVLPSVSAMLFL 328
           T I   +L+FLCF      NL +P    MLFL
Sbjct: 44  TGIVLEILYFLCFLAILKLNLRVPVYQLMLFL 75


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 213 LTFRLRRLQSVFIFFFFYVSPGERAAI*FYLQFPP 317
           +TFR   +Q   IFF+F V P   + I  + QFPP
Sbjct: 21  ITFRQMSIQLFIIFFYFLVFPA--STIFQFRQFPP 53


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 175  GPSIPKARRVPIFLMKYVLNKMFTIGSHGEGITSCNKNQTRK 50
            GP I K   +P    +Y+   +F IG H E I S +  + ++
Sbjct: 2028 GPQIRKFFSIPFIFEEYLSALLFYIGQHIEAINSISPAKVKE 2069


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 175  GPSIPKARRVPIFLMKYVLNKMFTIGSHGEGITSCNKNQTRK 50
            GP I K   +P    +Y+   +F IG H E I S +  + ++
Sbjct: 2028 GPQIRKFFSIPFIFEEYLSALLFYIGQHIEAINSISPAKVKE 2069


>Z46343-6|CAL36520.1|  366|Caenorhabditis elegans Hypothetical
           protein T23F11.3b protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +2

Query: 299 LPSVSAMLFLHN*NLLYGFNPA*FIVILIIISKLF---EHF--TFTSLHIYINELLFVSL 463
           L SV   L L     +   NPA  + I +++  +     H   T   LH +I   L+VS 
Sbjct: 245 LRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHLIHTLEELHAWILSCLYVSY 304

Query: 464 AKTRGGARYPIRPIV 508
           +       YP++P +
Sbjct: 305 SYMGNEISYPLKPFL 319


>Z46343-5|CAA86458.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.3a protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
 Frame = +2

Query: 299 LPSVSAMLFLHN*NLLYGFNPA*FIVILIIISKLF---EHF--TFTSLHIYINELLFVSL 463
           L SV   L L     +   NPA  + I +++  +     H   T   LH +I   L+VS 
Sbjct: 235 LRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHLIHTLEELHAWILSCLYVSY 294

Query: 464 AKTRGGARYPIRPIV 508
           +       YP++P +
Sbjct: 295 SYMGNEISYPLKPFL 309


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 233 TSICFYLLFFLCFARRTSRNLVLPSVSAMLFL 328
           + I F +L+FLCF      NL +P    ML L
Sbjct: 44  SGIVFLVLYFLCFLAVLKLNLKIPVYQLMLVL 75


>X58982-1|CAA41731.1|  498|Caenorhabditis elegans degenerin protein.
          Length = 498

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 269 NIKKKEDKNRLKSSEPKG*DVRCICTY 189
           N+ ++    R K  EP G D RCIC +
Sbjct: 26  NMMEECQSERTKFDEPTGFDDRCICAF 52


>U58726-8|AAB00580.3|  768|Caenorhabditis elegans Mechanosensory
           abnormality protein4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 269 NIKKKEDKNRLKSSEPKG*DVRCICTY 189
           N+ ++    R K  EP G D RCIC +
Sbjct: 296 NMMEECQSERTKFDEPTGFDDRCICAF 322


>U53669-1|AAC47265.1|  768|Caenorhabditis elegans MEC-4 protein.
          Length = 768

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 269 NIKKKEDKNRLKSSEPKG*DVRCICTY 189
           N+ ++    R K  EP G D RCIC +
Sbjct: 296 NMMEECQSERTKFDEPTGFDDRCICAF 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,285
Number of Sequences: 27780
Number of extensions: 236015
Number of successful extensions: 572
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)