Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04520.1 68415.m00458 eukaryotic translation initiation facto...    28   4.2  
At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing...    27   9.8  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    27   9.8  
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    27   9.8  

>At2g04520.1 68415.m00458 eukaryotic translation initiation factor
           1A, putative / eIF-1A, putative / eIF-4C, putative
           strong similarity to translation initiation factor
           (eIF-1A) [Beta vulgaris] GI:17977975; contains Pfam
           profile PF01176: Eukaryotic initiation factor 1A
          Length = 145

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 144 GTRRAFGIEGPMHRKIGTNAPDVLTFRLRRLQ 239
           GT+R   I G MH+K+   A D++   LR  Q
Sbjct: 54  GTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQ 85


>At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profile PF03105: SPX domain
          Length = 318

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 32  NYANSNFAGLIFITRCY-SFTMGANREHFVKYVFH 133
           NY++ NFAGL+ I + Y   T G  R  F + V H
Sbjct: 157 NYSSLNFAGLVKILKKYDKRTGGLLRLPFTQLVLH 191


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 278 RTSRNLVLPSVSAMLFLHN*NLLYGFNPA*FIVILIIISK 397
           +  +N VL S+  ++F +  NLL  F P   +V  +I SK
Sbjct: 58  KAPKNSVLNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSK 97


>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 493 WVPGPPSSFSETNEQQFIYIYVK*SEG 413
           WVPG   SF   +    +Y+Y K  EG
Sbjct: 242 WVPGGDGSFVAAHADGNLYVYEKNKEG 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,182
Number of Sequences: 28952
Number of extensions: 211815
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)