Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0608
         (696 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6VW50 Cluster: rRNA (Guanine-N(1)-)-methyltransferase;...    33   6.7  
UniRef50_Q6JEK9 Cluster: Cryopyrin; n=2; Theria|Rep: Cryopyrin -...    33   6.7  

>UniRef50_A6VW50 Cluster: rRNA (Guanine-N(1)-)-methyltransferase;
           n=2; Marinomonas|Rep: rRNA
           (Guanine-N(1)-)-methyltransferase - Marinomonas sp.
           MWYL1
          Length = 285

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 274 LSSGLRIDRAGAGESYYRRPRSSAL--RIIDARRTTMSVSMRVAIASSRQ 131
           L++G+RI  AG GE YY      AL  + I A RT + +S    +A+S++
Sbjct: 87  LANGVRIFDAGCGEGYYLSEIGEALSNQGISAERTGLDISKWAIVAASKR 136


>UniRef50_Q6JEK9 Cluster: Cryopyrin; n=2; Theria|Rep: Cryopyrin -
           Loxodonta africana (African elephant)
          Length = 413

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 430 PDRVSVNGFTRVKKRQYFFYFLKDGHE 350
           P  V + GF+  ++++YFF +  DGH+
Sbjct: 141 PRHVEILGFSEARRKEYFFKYFSDGHQ 167


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,241,631
Number of Sequences: 1657284
Number of extensions: 10471266
Number of successful extensions: 22805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22803
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)