Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0608
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120...    31   0.87 
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    29   2.7  
11_01_0778 + 6496465-6496565,6497072-6497630                           28   8.1  
11_01_0337 - 2519732-2521093                                           28   8.1  
01_05_0003 - 16841745-16841912,16842005-16842259,16842938-168430...    28   8.1  

>07_01_0172 -
           1201595-1201912,1202637-1202723,1202836-1202895,
           1203007-1203106,1203227-1203633,1204728-1204883,
           1204981-1205106,1205503-1205572,1205679-1205767
          Length = 470

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 235 ESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKK 113
           ESY R  R S  R++DA +  +  S+R A+   RQ  P  K
Sbjct: 405 ESYARDARLSPERLVDAVQRCLPESLRAAVQRCRQSRPASK 445


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 289 NTSTMLSSGLRIDRAGAGESYYRRPRSSALRIIDARRTT 173
           NT  +L+SG       AG +Y + PR++ALR    R  T
Sbjct: 27  NTFHVLNSGSAAAAVAAGRAYVQSPRATALRSPQVRAIT 65


>11_01_0778 + 6496465-6496565,6497072-6497630
          Length = 219

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -1

Query: 381 TFFTSLKTGTNQTTKELTDGSRNSSSYALLSTPPQCYHQG*G*TG 247
           T   S  +GT + T+ LT   R SSS    STP Q Y  G   TG
Sbjct: 127 TIEESRASGTYRETRNLTRNERESSSS---STPMQMYEAGWAPTG 168


>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 497 PWXXXXXXXSQEAPESDITRFVTGPGI 417
           PW        Q  P+ ++ RF  GPGI
Sbjct: 112 PWLALDRRTYQSLPDGEVHRFADGPGI 138


>01_05_0003 -
           16841745-16841912,16842005-16842259,16842938-16843085,
           16843740-16843854,16844294-16844465,16844481-16844617,
           16844738-16844792
          Length = 349

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 357 GTNQTTKELTDGSRNSSSYALLSTPPQCYHQG*G*TG 247
           GT + T+ +T   R SSSY   STP + Y  G   TG
Sbjct: 218 GTYRETRNMTRNERESSSY---STPVKMYEAGWAPTG 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,455
Number of Sequences: 37544
Number of extensions: 293609
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)