Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0608
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45245| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)                    29   3.6  

>SB_45245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = -1

Query: 501 RTLAILVPLFLSGGTGVRHNPVRYRTGYP*MDSQELKKGSTFFTSLKTGTNQTTKELTDG 322
           RTL ++  + ++GG  V+  PVR       +D  E ++  T  +  +T T+    +    
Sbjct: 60  RTLPLIEDVSVNGGAAVKKKPVRLTKSLNFLDENEARRSHT--SRRRTYTSGAISKDVTF 117

Query: 321 SRNSSSYALLST 286
           S+N ++ AL S+
Sbjct: 118 SKNLTTRALASS 129


>SB_57159| Best HMM Match : PI-PLC-X (HMM E-Value=0)
          Length = 1289

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 322  KQKFQQLRSTLNTSTMLSSGLRIDRAGAGESYYRRPRSSALRI 194
            K+ +       N ST   S L  + +GAG  YY R R S + +
Sbjct: 973  KKSYSASSIASNPSTQSLSSLNSNSSGAGSQYYTRSRESVVTL 1015


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,186
Number of Sequences: 59808
Number of extensions: 339039
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)