Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0608
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   7.3  
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe...    28   7.3  
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel...    28   7.3  
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel...    28   7.3  
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel...    28   7.3  
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel...    28   7.3  
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag...    28   7.3  
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu...    28   7.3  
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu...    28   7.3  
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu...    28   7.3  
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen...    28   7.3  
U23519-1|AAK31500.1|  134|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription...    27   9.7  
AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related ...    27   9.7  
AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.      27   9.7  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 458 VPPERKRGTRMAKVLQLPEFLVGDYALKKQKKKFC 562
           V P+RK+G    ++L++  F   ++A K + K  C
Sbjct: 517 VTPQRKQGNENIQILEVLHFRRNEHAWKNKGKNIC 551


>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform f protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform c protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform a protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform d protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform e protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
           sensitive calciumchannel alpha1 subunit isoform D
           protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform C protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform B protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform A protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
           voltage-dependent calcium channelalpha13 subunit
           protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 271 SSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRVAIASSRQRDPEKKNGARVTW 92
           +S + ++R  + +S  R     AL  I+  + T+ +S    +ASS +  P +  G ++ W
Sbjct: 30  TSAITVNRRQS-QSTRRHEDVEALGSIEGSKETLQLSEHGRLASSSEASPSRWEGRQIEW 88


>U23519-1|AAK31500.1|  134|Caenorhabditis elegans Hypothetical
           protein F26G1.3 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 267 DDSIVEVLRVERNCWNFCFRQ 329
           DDS+  VL VE  C NF FR+
Sbjct: 61  DDSLNAVLIVEHKCHNFTFRR 81


>AF153275-1|AAD54940.1|  301|Caenorhabditis elegans transcription
           factor RUN protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 322 KQKFQQLRSTLNTSTMLSSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRV--A 149
           KQK +Q   +LNTST LSS        + +   +RP SS   I  +  T++++      +
Sbjct: 218 KQKVEQENVSLNTSTCLSSPSIFITPTSDDRKLKRP-SSPRSITKSSETSINLIQETPES 276

Query: 148 IASSRQRD 125
           + S R+R+
Sbjct: 277 VESKRRRN 284


>AF003145-2|AAB57715.2|  301|Caenorhabditis elegans Runt related
           protein 1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 322 KQKFQQLRSTLNTSTMLSSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRV--A 149
           KQK +Q   +LNTST LSS        + +   +RP SS   I  +  T++++      +
Sbjct: 218 KQKVEQENVSLNTSTCLSSPSIFITPTSDDRKLKRP-SSPRSITKSSETSINLIQETPES 276

Query: 148 IASSRQRD 125
           + S R+R+
Sbjct: 277 VESKRRRN 284


>AB027412-1|BAA77765.1|  301|Caenorhabditis elegans RNT-1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -3

Query: 322 KQKFQQLRSTLNTSTMLSSGLRIDRAGAGESYYRRPRSSALRIIDARRTTMSVSMRV--A 149
           KQK +Q   +LNTST LSS        + +   +RP SS   I  +  T++++      +
Sbjct: 218 KQKVEQENVSLNTSTCLSSPSIFITPTSDDRKLKRP-SSPRSITKSSETSINLIQETPES 276

Query: 148 IASSRQRD 125
           + S R+R+
Sbjct: 277 VESKRRRN 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,599
Number of Sequences: 27780
Number of extensions: 250167
Number of successful extensions: 640
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)