Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0608
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32660.2 68417.m04649 protein kinase (AFC3) (AME3) identical ...    28   5.1  
At4g32660.1 68417.m04650 protein kinase (AFC3) (AME3) identical ...    28   5.1  
At4g24740.2 68417.m03540 protein kinase (AFC2) identical to prot...    28   5.1  
At4g24740.1 68417.m03541 protein kinase (AFC2) identical to prot...    28   5.1  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    28   6.8  

>At4g32660.2 68417.m04649 protein kinase (AFC3) (AME3) identical to
           protein kinase AFC3 [Arabidopsis thaliana]
           SWISS-PROT:P51568
          Length = 356

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 250 RAGAGESYYR-RPRSSALRIIDARRTTMSVSMRVAIASSRQ-RDPE 119
           R+ A E+++R  P+SSA+++ID   T     +  +I  +R  R PE
Sbjct: 217 RSAANETHFRCLPKSSAIKLIDFGSTVCDNRIHHSIVQTRHYRSPE 262


>At4g32660.1 68417.m04650 protein kinase (AFC3) (AME3) identical to
           protein kinase AFC3 [Arabidopsis thaliana]
           SWISS-PROT:P51568
          Length = 400

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 250 RAGAGESYYR-RPRSSALRIIDARRTTMSVSMRVAIASSRQ-RDPE 119
           R+ A E+++R  P+SSA+++ID   T     +  +I  +R  R PE
Sbjct: 217 RSAANETHFRCLPKSSAIKLIDFGSTVCDNRIHHSIVQTRHYRSPE 262


>At4g24740.2 68417.m03540 protein kinase (AFC2) identical to protein
           kinase AFC2 [Arabidopsis thaliana] SWISS-PROT:P51567
          Length = 324

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 229 YYRRPRSSALRIIDARRTTMSVSMRVAIASSRQ-RDPE 119
           Y R P+SSA+++ID   TT     +  I S+R  R PE
Sbjct: 150 YKRVPKSSAIKVIDFGSTTYERQDQTYIVSTRHYRAPE 187


>At4g24740.1 68417.m03541 protein kinase (AFC2) identical to protein
           kinase AFC2 [Arabidopsis thaliana] SWISS-PROT:P51567
          Length = 427

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 229 YYRRPRSSALRIIDARRTTMSVSMRVAIASSRQ-RDPE 119
           Y R P+SSA+++ID   TT     +  I S+R  R PE
Sbjct: 253 YKRVPKSSAIKVIDFGSTTYERQDQTYIVSTRHYRAPE 290


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 310 QQLRSTLNTSTMLSSGLRIDRAGAG 236
           QQ+ ST+N    + SG  + RAGAG
Sbjct: 876 QQVTSTINMGKAMGSGTGLGRAGAG 900


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,886
Number of Sequences: 28952
Number of extensions: 233157
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)