Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0607
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   4.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   5.4  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   7.2  

>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 352 STPTANGGRSTKTALRPRASSSLNKTS 432
           STPT    R+T+T  RP A+++ +  S
Sbjct: 151 STPTTTTARTTRTTPRPTATTNTSNQS 177


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 246 SLELLEDDLSVPSLREYTCPCRARNPHTTPGASCSP 139
           SLE L  +   P L + TCPC    PH    AS  P
Sbjct: 365 SLEELFKERVTPILSQLTCPC-ILIPHINDAASDHP 399


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 315 NELEIWKELTAHFDPDGKWRKKYE 386
           N  +IW+EL   +   G W+ +YE
Sbjct: 96  NTFQIWQELYGSYVWQGYWQPEYE 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,167
Number of Sequences: 5004
Number of extensions: 42114
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)