Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0607
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0331 - 16738148-16738231,16738232-16738318,16738486-167385... 33 0.20
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 31 0.80
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 31 1.1
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 30 1.4
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 29 3.2
10_08_0809 - 20725858-20725950,20726375-20726545,20726895-207271... 28 7.4
06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350... 27 9.8
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 27 9.8
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 27 9.8
>09_04_0331 -
16738148-16738231,16738232-16738318,16738486-16738582,
16739139-16739176,16740140-16740196,16740487-16740964,
16741199-16741203
Length = 281
Score = 33.1 bits (72), Expect = 0.20
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +3
Query: 21 C*AGSSTMKVLIVLSCVLVAVLADDKYTDKYDKINLQEILENKRLLESYVDCVLGKGKCT 200
C S ++V++ L + L D+K Y + E L+ + LLE + C LG G+ T
Sbjct: 144 CKTEHSKLQVVLSLLHLKARYLEDEKPLKSY-AYPMLENLDKEGLLEQLLHCGLGAGEVT 202
Query: 201 PEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYL-IKNELEIWK 335
+ + Q+ +KC E G S L + + L +W+
Sbjct: 203 ARVEGVGGAGQQCPSCAVDKCKELSMLGIRRSRGGLNLMDFLAVWE 248
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +3
Query: 129 QEILENKRLLESYVDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYL 308
QE K +++S D VLG C P+ E+ + AL+ G K T G S
Sbjct: 416 QEKTVMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKATFDSTVGIHPS---- 471
Query: 309 IKNELEIWKELTAHFDPDGK 368
E + LT P K
Sbjct: 472 AAEEFVTMRTLTRRVSPSSK 491
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 198 TPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKWRK 377
+P+ + LKD L L C++C ++ ET+ D NE ++++ L+ H D K
Sbjct: 254 SPQKEALKDDLTTTLVQQCQQCQRTIQRIIETAGD----NEAQLFEALSVH-DELEKVLS 308
Query: 378 KYED 389
KY++
Sbjct: 309 KYKE 312
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 96 KYTDKYDKINLQEILENKRLLESYVDCVLGKGK 194
+++ YD +L L+ LLE+++ C+L KGK
Sbjct: 358 RFSRAYDYFSLVSFLDASPLLETFILCILQKGK 390
>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 424 YSGMTMPLALARSSYFFLHLPSGSKW 347
+SG++ P+++ S +HLPSG +W
Sbjct: 1169 WSGLSSPISIILSKLPTVHLPSGPRW 1194
>10_08_0809 -
20725858-20725950,20726375-20726545,20726895-20727101,
20727208-20727879
Length = 380
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 243 LELLEDDLSVPSLREYTCPCRARNPHTTP 157
+EL++DD S L E P R P TTP
Sbjct: 1 MELMDDDGSSSLLEELMAPLRRGTPTTTP 29
>06_03_1047 -
27133869-27134345,27134444-27134701,27134841-27135041,
27135242-27135584,27135674-27135732,27136256-27136581,
27136753-27136849,27137072-27137182,27137691-27138305,
27139578-27139880
Length = 929
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 138 LENKRLLESYVDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQE 278
+E+ RLL+SY + + G G+E + H++ T C CT A E
Sbjct: 25 MEDVRLLDSYDEEMGGGAAAAAAGEEEEAHVRVTGMT-CSACTSAVE 70
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 129 QEILENKRLLESYVDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYL 308
Q +++ R + +Y LG G C +EL +ALE + + KG E +D
Sbjct: 233 QMVVQKCRKMTTYEKRKLGAGLCHLSPEELT----KALEMVAQDNPSFEAKGDELELDMD 288
Query: 309 IKNELEIWK 335
++E +W+
Sbjct: 289 AQSETTLWR 297
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 131 LQVNFVIFVSVLIISKYGHEYTAQNYKD 48
L +NFV+ +S++IIS H+Y + KD
Sbjct: 312 LTINFVLAISIVIISM--HQYLSNQIKD 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,559
Number of Sequences: 37544
Number of extensions: 268937
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -