Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0607
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41440.1 68415.m05120 expressed protein                             29   2.7  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    29   3.5  
At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate synth...    28   6.2  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    27   8.2  
At5g35380.1 68418.m04205 protein kinase family protein contains ...    27   8.2  

>At2g41440.1 68415.m05120 expressed protein
          Length = 544

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 111 YDKINLQEILENKRLLESYVDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAE 290
           ++ ++++  L+  RLL   + C    G   PE   LK HLQ AL    ++  + ++   E
Sbjct: 392 HEAVSMENELKRLRLLTRRMTCKDLDGLTFPELLSLKSHLQTALLIVKDQTKKIEQLLKE 451

Query: 291 TSIDYLIKNELEI 329
                LI+++L++
Sbjct: 452 DDGWMLIRSQLQL 464


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 213 ELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKWR 374
           ++K  L + +  GCE+C + Q K  E +++Y+ K   E  K       P   W+
Sbjct: 107 DVKPALPKGVVRGCEECKDCQ-KEFEDTLNYIAKIRPEAEKYGICRIVPPPSWK 159


>At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           1-aminocyclopropane-1-carboxylate synthase, Arabidopsis
           thaliana, GI:940370 [S71174]
          Length = 469

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 316 MNWKFGRS*QPISTPTANGGRSTKTALRPRASSSLNKTSIKL 441
           + W+ G    PI   +ANG R TK AL   A     K ++K+
Sbjct: 152 LKWRTGAEIVPIQCKSANGFRITKVALE-EAYEQAQKLNLKV 192


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 141 ENKRLLESYVDCVLGKGKCTPEGKELKDHLQEALETGC 254
           +NK  +      ++G+  C   GK  K+ LQE L+  C
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYAC 392


>At5g35380.1 68418.m04205 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 731

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 201 PEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKN 317
           PE K+L+D  +E+++ G  + +  +  G+ TSI  +I +
Sbjct: 675 PELKKLRDLAEESIKFGVRQPSPIRSSGSATSIQEIISD 713


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,015
Number of Sequences: 28952
Number of extensions: 219702
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)