Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0605
(320 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length... 120 5e-27
UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284; Eukary... 120 5e-27
UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2... 119 1e-26
UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S riboso... 114 3e-25
UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8; Euthe... 104 3e-22
UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5; Eukaryot... 96 2e-19
UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 ... 89 2e-17
UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26; Eukaryo... 85 2e-16
UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2; Cyt... 83 1e-15
UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1; Encephal... 77 8e-14
UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n... 75 4e-13
UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n... 73 1e-12
UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S riboso... 66 1e-10
UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n... 66 1e-10
UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n... 66 2e-10
UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n... 63 1e-09
UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5; Sulfolo... 58 4e-08
UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella... 56 1e-07
UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n... 52 2e-06
UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34; Archae... 52 2e-06
UniRef50_UPI0000DA3DCA Cluster: PREDICTED: similar to 40S riboso... 51 6e-06
UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3; Halobac... 51 6e-06
UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S riboso... 50 8e-06
UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum l... 50 1e-05
UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus N... 48 3e-05
UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6; Euryarc... 48 4e-05
UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1; Cenarch... 48 4e-05
UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n... 47 7e-05
UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3; ... 46 2e-04
UniRef50_UPI0001553406 Cluster: PREDICTED: hypothetical protein;... 46 2e-04
UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7; Archaea... 46 2e-04
UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2; Firmicut... 42 0.003
UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5; Bacteria... 41 0.006
UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured m... 40 0.008
UniRef50_A2XN57 Cluster: Putative uncharacterized protein; n=1; ... 39 0.025
UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17; Bacteri... 39 0.025
UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1; Nanoarc... 38 0.033
UniRef50_UPI0000D998E5 Cluster: PREDICTED: similar to 40S riboso... 38 0.043
UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6; Bacteria... 38 0.043
UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3; Mycoplas... 37 0.100
UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep... 36 0.13
UniRef50_Q50301 Cluster: 30S ribosomal protein S5; n=2; Mycoplas... 36 0.13
UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast p... 36 0.13
UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellul... 36 0.23
UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9; Firmicut... 35 0.40
UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3; Fusobact... 34 0.53
UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 34 0.70
UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7; Chlamydi... 34 0.70
UniRef50_Q2GEC2 Cluster: 30S ribosomal protein S5; n=1; Neoricke... 33 1.2
UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32; Bacteri... 33 1.2
UniRef50_Q2PC93 Cluster: SCO-spondin precursor; n=4; Eukaryota|R... 33 1.6
UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellula... 33 1.6
UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11; Bacteri... 33 1.6
UniRef50_UPI0000ECCD29 Cluster: UPI0000ECCD29 related cluster; n... 32 2.1
UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellula... 32 2.1
UniRef50_Q2G3B0 Cluster: Putative uncharacterized protein; n=1; ... 32 2.8
UniRef50_Q7UN03 Cluster: 30S ribosomal protein S5; n=3; Bacteria... 32 2.8
UniRef50_A7CTW8 Cluster: Regulatory protein LacI; n=1; Opitutace... 31 4.9
UniRef50_A4BPE7 Cluster: Putative uncharacterized protein; n=1; ... 31 4.9
UniRef50_Q7MTN0 Cluster: 30S ribosomal protein S5; n=32; Bacteri... 31 4.9
UniRef50_Q4FLN5 Cluster: 30S ribosomal protein S5; n=4; Ricketts... 31 4.9
UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128; Bacter... 31 4.9
UniRef50_UPI0000D9BAAC Cluster: PREDICTED: hypothetical protein;... 31 6.5
UniRef50_A4S3U8 Cluster: Predicted protein; n=2; Ostreococcus|Re... 31 6.5
UniRef50_Q7R8F0 Cluster: Receptor protein kinase, putative, 5' p... 31 6.5
UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n... 30 8.6
UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole ge... 30 8.6
UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2; Deinococ... 30 8.6
>UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length
enriched library, clone:1200003H09 product:ribosomal
protein S2, full insert sequence; n=13; Eutheria|Rep:
Adult male lung cDNA, RIKEN full-length enriched
library, clone:1200003H09 product:ribosomal protein S2,
full insert sequence - Mus musculus (Mouse)
Length = 235
Score = 120 bits (290), Expect = 5e-27
Identities = 54/74 (72%), Positives = 59/74 (79%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRGTGIV APVPKKL MAG+ DCYTSARG T LGNFAKAT+ AI TY+YLTP L
Sbjct: 138 IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDL 197
Query: 138 WRDIPLTKSPYSEF 97
W++ TKSPY EF
Sbjct: 198 WKETVFTKSPYQEF 211
>UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284;
Eukaryota|Rep: 40S ribosomal protein S2 - Homo sapiens
(Human)
Length = 293
Score = 120 bits (290), Expect = 5e-27
Identities = 54/74 (72%), Positives = 59/74 (79%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRGTGIV APVPKKL MAG+ DCYTSARG T LGNFAKAT+ AI TY+YLTP L
Sbjct: 196 IPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDL 255
Query: 138 WRDIPLTKSPYSEF 97
W++ TKSPY EF
Sbjct: 256 WKETVFTKSPYQEF 269
>UniRef50_Q9BSW5 Cluster: RPS2 protein; n=26; Coelomata|Rep: RPS2
protein - Homo sapiens (Human)
Length = 97
Score = 119 bits (286), Expect = 1e-26
Identities = 53/73 (72%), Positives = 58/73 (79%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PAPRGTGIV APVPKKL MAG+ DCYTSARG T LGNFAKAT+ AI TY+YLTP LW
Sbjct: 1 PAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW 60
Query: 135 RDIPLTKSPYSEF 97
++ TKSPY EF
Sbjct: 61 KETVFTKSPYQEF 73
>UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 237
Score = 114 bits (275), Expect = 3e-25
Identities = 51/74 (68%), Positives = 56/74 (75%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRGTG+V APVPKKL MAG+ DCYTSAR T LGNFAKAT+ I TY YLTP L
Sbjct: 140 IPAPRGTGMVSAPVPKKLLMMAGIDDCYTSARDCTASLGNFAKATFDTISKTYTYLTPDL 199
Query: 138 WRDIPLTKSPYSEF 97
W++ TKSPY EF
Sbjct: 200 WKETVFTKSPYEEF 213
>UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8;
Eutheria|Rep: ribosomal protein S2 - Rattus norvegicus
Length = 233
Score = 104 bits (250), Expect = 3e-22
Identities = 49/72 (68%), Positives = 54/72 (75%)
Frame = -3
Query: 312 APRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWR 133
APRGTGIV APVPKKL MA + DCYT ARG T LGNFAKAT+ AI Y+YLTP LW+
Sbjct: 140 APRGTGIVSAPVPKKLLMMA-IDDCYTLARGCTATLGNFAKATFDAISKIYSYLTPDLWK 198
Query: 132 DIPLTKSPYSEF 97
+ TKSPY EF
Sbjct: 199 ETVFTKSPYQEF 210
>UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5;
Eukaryota|Rep: 40S ribosomal protein S2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 253
Score = 95.9 bits (228), Expect = 2e-19
Identities = 40/74 (54%), Positives = 52/74 (70%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG G+V APV K+ Q+AG++DCYT +RGST LGNF KA +AA TY LTP L
Sbjct: 169 VPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNL 228
Query: 138 WRDIPLTKSPYSEF 97
W + P ++P E+
Sbjct: 229 WAERPFGQTPIEEY 242
>UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 -
Mus musculus (Mouse); n=3; Murinae|Rep: RBM27_MOUSE
Isoform 2 of Q5SFM8 - Mus musculus (Mouse) - Rattus
norvegicus
Length = 266
Score = 89.0 bits (211), Expect = 2e-17
Identities = 40/71 (56%), Positives = 48/71 (67%)
Frame = -3
Query: 309 PRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWRD 130
P I+ APVPKKL +A + DCYTSARG T L NF KAT+ AI +TY+YLTP LW+
Sbjct: 180 PPTRNIISAPVPKKLLLLANIDDCYTSARGCTATLDNFDKATFNAISNTYSYLTPNLWKG 239
Query: 129 IPLTKSPYSEF 97
+ KS Y EF
Sbjct: 240 LVFAKSTYLEF 250
>UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26;
Eukaryota|Rep: 40S ribosomal protein S2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 254
Score = 85.4 bits (202), Expect = 2e-16
Identities = 39/70 (55%), Positives = 48/70 (68%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRG+GIV +P KKL Q+AGV+D YT + G T L N KA + AI +TY +LTP L
Sbjct: 170 IPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNL 229
Query: 138 WRDIPLTKSP 109
W + PL SP
Sbjct: 230 WAEQPLPVSP 239
>UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2; n=12;
Eukaryota|Rep: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2 -
Ostreococcus lucimarinus CCE9901
Length = 273
Score = 83.0 bits (196), Expect = 1e-15
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRG GIV + KK+ MAG+ D YT +RG T LGN KATY A+ ++Y +LTP L
Sbjct: 186 IPAPRGAGIVASGTVKKVLAMAGLHDVYTCSRGHTRTLGNSVKATYEALKNSYGFLTPDL 245
Query: 138 WRDIPLTKSPYSEF 97
W + K P EF
Sbjct: 246 WAETRFAKPPAQEF 259
>UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S2 -
Encephalitozoon cuniculi
Length = 242
Score = 77.0 bits (181), Expect = 8e-14
Identities = 35/74 (47%), Positives = 49/74 (66%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRGTGI+ V KK+F++AG++D YT + G+T NFAKA+ AA+ T + + P
Sbjct: 157 IPAPRGTGIISGSVNKKIFELAGIKDLYTLSFGATSTTENFAKASIAALEATSSMILPDQ 216
Query: 138 WRDIPLTKSPYSEF 97
W + P T +P EF
Sbjct: 217 WEEKPRTLNPLLEF 230
>UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000502977 UniRef100 entry -
Rattus norvegicus
Length = 140
Score = 74.5 bits (175), Expect = 4e-13
Identities = 40/65 (61%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYL--TP 145
IPA RGTGI APVP K MAG+ DCYTSARG T L FA+AT+ AI TY+YL T
Sbjct: 32 IPAHRGTGISSAPVPTKPLMMAGIDDCYTSARGCTASLDYFAQATFDAIFKTYSYLIRTR 91
Query: 144 KLWRD 130
L RD
Sbjct: 92 PLERD 96
>UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n=1;
Bos taurus|Rep: UPI000057EB46 UniRef100 entry - Bos
Taurus
Length = 258
Score = 72.9 bits (171), Expect = 1e-12
Identities = 39/76 (51%), Positives = 47/76 (61%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
IPAPRGTG V APVPK L MAG+ D +SA G T LGNF KA + I T++YL P L
Sbjct: 172 IPAPRGTGTVSAPVPK-LLMMAGIDDS-SSASGCTATLGNFTKAIFDTISKTHSYLIPDL 229
Query: 138 WRDIPLTKSPYSEFKV 91
++ KS Y +V
Sbjct: 230 QKETVFAKSLYQNSRV 245
>UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 213
Score = 66.5 bits (155), Expect = 1e-10
Identities = 31/54 (57%), Positives = 33/54 (61%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYA 157
IPAPRGTG V APVPKKL MAG+ DCYTSARG T G + P A
Sbjct: 136 IPAPRGTGFVSAPVPKKLLMMAGIDDCYTSARGHTATWGTLPRLLLMRSPRPTA 189
>UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBFACC UniRef100 entry -
Rattus norvegicus
Length = 172
Score = 66.1 bits (154), Expect = 1e-10
Identities = 33/57 (57%), Positives = 36/57 (63%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLT 148
IPAPRGTGIV APV K AG+ +CY SAR T L NF+K T I TY YLT
Sbjct: 75 IPAPRGTGIVSAPVLTKFLMNAGIYNCYISARCYTATLYNFSKPTIEVISKTYRYLT 131
>UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n=1;
Mus musculus|Rep: UPI0000D62CF0 UniRef100 entry - Mus
musculus
Length = 215
Score = 65.7 bits (153), Expect = 2e-10
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = -3
Query: 294 IVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWRDIPLTK 115
IV VP+KL A + CYTSAR T LGN AKAT+ A+ T ++ TP LW++ TK
Sbjct: 128 IVSVLVPRKLMLRASIDSCYTSARSYTVTLGNIAKATFDAVSKT-SHSTPNLWKEAVFTK 186
Query: 114 SPY 106
SPY
Sbjct: 187 SPY 189
>UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB449D UniRef100
entry - Canis familiaris
Length = 196
Score = 62.9 bits (146), Expect = 1e-09
Identities = 34/62 (54%), Positives = 38/62 (61%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
I APRGT I+ APVPKKL +MA + D + ARG T L N KATY I TY LT
Sbjct: 96 ISAPRGTDILSAPVPKKLLRMASIDDGDSLARGCTAILDNVIKATY-DISKTYVSLTSDF 154
Query: 138 WR 133
WR
Sbjct: 155 WR 156
>UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S5P -
Sulfolobus solfataricus
Length = 214
Score = 58.0 bits (134), Expect = 4e-08
Identities = 24/61 (39%), Positives = 40/61 (65%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAP+GTG+V V K L AG++D +++ +G T NF +A Y+A+ +TY ++T +
Sbjct: 150 LPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQD 209
Query: 138 W 136
W
Sbjct: 210 W 210
>UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella
natans|Rep: Ribosomal protein S2 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 266
Score = 56.4 bits (130), Expect = 1e-07
Identities = 23/60 (38%), Positives = 38/60 (63%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PAP+GTGIV + + +++G++DC+T + G T N KAT+ A+ +Y ++TP W
Sbjct: 203 PAPKGTGIVASKFQLNVLKISGIRDCFTKSFGRTKSSFNTIKATFNALSSSYKFVTPDYW 262
>UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC060C UniRef100 entry -
Rattus norvegicus
Length = 206
Score = 52.4 bits (120), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARG 220
IPAPR T I AP+PKKL MAG+ DC+TSARG
Sbjct: 174 IPAPRDTVISSAPMPKKLLMMAGINDCHTSARG 206
>UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34;
Archaea|Rep: 30S ribosomal protein S5P - Pyrococcus
furiosus
Length = 236
Score = 52.0 bits (119), Expect = 2e-06
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHT 163
IP PRG G+V V KK+ ++AGVQD ++ G T NFAKA + A+ +T
Sbjct: 157 IPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNT 208
>UniRef50_UPI0000DA3DCA Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Rattus norvegicus
Length = 68
Score = 50.8 bits (116), Expect = 6e-06
Identities = 27/59 (45%), Positives = 33/59 (55%)
Frame = -3
Query: 291 VFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWRDIPLTK 115
VF V KK +A +QDCY AR + LGN+AKAT+ T YLT LW + TK
Sbjct: 10 VFTTVLKKKLLLASIQDCYMIARVHSLMLGNYAKATFYVFSMTSNYLTFDLWTENVCTK 68
>UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 212
Score = 50.8 bits (116), Expect = 6e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPK 142
PAPRG G+ +K+ ++AG++D +T + G+T NFAKAT+ A+ +T P+
Sbjct: 145 PAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTVNFAKATFNALQNTAEARVPE 202
>UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 181
Score = 50.4 bits (115), Expect = 8e-06
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -3
Query: 195 AKATYAAIPHTYAYLTPKLWRDIPLTKSPYSEF 97
AKAT+ AI TY+YLTP LW++ TKSPY EF
Sbjct: 125 AKATFDAISKTYSYLTPDLWKETVFTKSPYQEF 157
>UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S5 -
Halorubrum lacusprofundi ATCC 49239
Length = 265
Score = 50.0 bits (114), Expect = 1e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PAP+G G+ A + + ++AGV+D +T++ G+T N AKAT+ A+ + TP+
Sbjct: 196 PAPQGLGLAAAETVRNILELAGVEDAWTNSDGNTRTTVNLAKATFNALENAAQSRTPQHA 255
Query: 135 RDI 127
R++
Sbjct: 256 REV 258
>UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 238
Score = 48.4 bits (110), Expect = 3e-05
Identities = 21/54 (38%), Positives = 36/54 (66%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYA 157
IPAPRG G+V K+L ++AG++D +T+A+GST + + +KA + T++
Sbjct: 183 IPAPRGLGLVAGGKIKRLLELAGLKDAWTTAKGSTPTMNSTSKAILDCLRQTFS 236
>UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S5P -
Methanococcus maripaludis
Length = 225
Score = 48.0 bits (109), Expect = 4e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
+PAPRG G+V V K + +AGV+D +T G T NFA+AT+ A+
Sbjct: 153 LPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTYNFAEATFDAL 201
>UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1;
Cenarchaeum symbiosum|Rep: 30S ribosomal protein S5P -
Cenarchaeum symbiosum
Length = 219
Score = 48.0 bits (109), Expect = 4e-05
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYA 157
+PAPRG G+V ++L ++AG++D YT+A+GST + +KA + T++
Sbjct: 164 LPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTFS 217
>UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n=1;
Mus musculus|Rep: UPI000056598D UniRef100 entry - Mus
musculus
Length = 239
Score = 47.2 bits (107), Expect = 7e-05
Identities = 34/77 (44%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQM----AGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYL 151
I AP T I+ VPK L + A D SA G T LG AK T+ AI TY+ L
Sbjct: 160 ITAP-STCIISGLVPKNLLLLLLLLASTDDRCISASGCTDALGRLAKTTFDAISKTYSCL 218
Query: 150 TPKLWRDIPLTKSPYSE 100
TP LW TK YSE
Sbjct: 219 TPDLWNK---TKPLYSE 232
>UniRef50_A3BJ14 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 163
Score = 46.0 bits (104), Expect = 2e-04
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -3
Query: 303 GTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAK 190
G+ +V VPKK+ + AG++D +TS+RGST L NF K
Sbjct: 2 GSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNFVK 39
>UniRef50_UPI0001553406 Cluster: PREDICTED: hypothetical protein;
n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 208
Score = 45.6 bits (103), Expect = 2e-04
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +2
Query: 185 VALAKFPKGPVEPRAEV*QSCTPAI*KSFLGTGANTIPVPRGAGI 319
+ LAK PK V+P A V QS P+ FLGT A +PVP GAG+
Sbjct: 8 IVLAKSPKVAVQPLAHVQQSSIPSSSSHFLGTEAEVMPVPMGAGM 52
>UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7;
Archaea|Rep: 30S ribosomal protein S5P - Picrophilus
torridus
Length = 221
Score = 45.6 bits (103), Expect = 2e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAY-LTPKL 139
PAP+G G+ V K + +MAG+ D + A G T N+A AT+ A+ T + + PK+
Sbjct: 143 PAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKTVSIKINPKI 202
Query: 138 WRDIPL 121
P+
Sbjct: 203 NLSTPI 208
>UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2;
Firmicutes|Rep: 30S ribosomal protein S5 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 203
Score = 41.9 bits (94), Expect = 0.003
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPK 142
+PAP GTGI+ + + ++AG D YT +RG+ P+ N +AT I LTPK
Sbjct: 136 LPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRAT---INGLLQQLTPK 190
>UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5;
Bacteria|Rep: 30S ribosomal protein S5 - Aquifex
aeolicus
Length = 208
Score = 40.7 bits (91), Expect = 0.006
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
+PA RGTG+V K +F++AG D T GST P N +A + A+
Sbjct: 114 LPARRGTGVVAGGAAKPVFELAGYTDVLTKIIGSTNP-DNVVRAVFDAL 161
>UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein S5 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 202
Score = 40.3 bits (90), Expect = 0.008
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
+PAP G G+V + +++ +AGV D ++ + G T N+A+AT+ A+
Sbjct: 129 MPAPAGKGLVVSDYGRRVLTLAGVTDVWSRSAGQTRTTINYAQATFNAL 177
>UniRef50_A2XN57 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 84
Score = 38.7 bits (86), Expect = 0.025
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 189 ATYAAIPHTYAYLTPKLWRDIPLTKSPYSEF 97
AT+ + TY +LTP WRD KSP+ E+
Sbjct: 32 ATFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 62
>UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17;
Bacteria|Rep: 30S ribosomal protein S5 - Leptospira
interrogans
Length = 187
Score = 38.7 bits (86), Expect = 0.025
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
P+ GTGI+ + + + AG+QD T + GS+ P+ N KAT A+ +
Sbjct: 117 PSTAGTGIIAGASVRSIVEKAGIQDVLTKSWGSSNPV-NIVKATLDALEQLETPILAAKK 175
Query: 135 RDIPLTK 115
R I L K
Sbjct: 176 RGISLNK 182
>UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S5P -
Nanoarchaeum equitans
Length = 231
Score = 38.3 bits (85), Expect = 0.033
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PAP+G GIV KK+F++AG++D + + G T N A + A+
Sbjct: 158 PAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDAL 205
>UniRef50_UPI0000D998E5 Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 84
Score = 37.9 bits (84), Expect = 0.043
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 183 YAAIPHTYAYLTPKLWRDIPLTKSPYSE 100
+ AI TY+YLTP LW++ TK+PY +
Sbjct: 25 FDAISKTYSYLTPDLWKETVFTKTPYHD 52
>UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6;
Bacteria|Rep: 30S ribosomal protein S5 - Thermotoga
maritima
Length = 178
Score = 37.9 bits (84), Expect = 0.043
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKAT 184
PA GTGI+ + + ++AG+Q+ T + GST PL N A AT
Sbjct: 102 PAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPL-NLALAT 144
>UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
penetrans
Length = 234
Score = 36.7 bits (81), Expect = 0.100
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI-----PHTYAYL 151
PAP+GTG++ K + ++ G +D Y+ G L N +AT + P YA L
Sbjct: 166 PAPKGTGVIAGGPIKVVLELCGFKDVYSKNLGKNTSL-NMVRATIKGLQMQKSPKEYATL 224
Query: 150 TPKLWRDI 127
K +DI
Sbjct: 225 RDKTLKDI 232
>UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep:
Ribosomal protein S5 - Victivallis vadensis ATCC BAA-548
Length = 181
Score = 36.3 bits (80), Expect = 0.13
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTG++ + + ++AGV+D + G++ N AKAT+ AI
Sbjct: 102 PASAGTGLIAGGAVRAILELAGVEDVLAKSLGASN-AANVAKATFKAI 148
>UniRef50_Q50301 Cluster: 30S ribosomal protein S5; n=2;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
pneumoniae
Length = 219
Score = 36.3 bits (80), Expect = 0.13
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PAP+GTGI+ + + ++AG D YT G P+ N AT I
Sbjct: 153 PAPQGTGIIAGGAIRAIIELAGYSDIYTKNLGRNTPI-NMIHATMDGI 199
>UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast
precursor; n=12; cellular organisms|Rep: 30S ribosomal
protein S5, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 303
Score = 36.3 bits (80), Expect = 0.13
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PA GTG++ + + +MAGV++ GS L N A+AT AA+ +
Sbjct: 235 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN-ARATLAAVQQMRQFRDVAQE 293
Query: 135 RDIPL 121
R IP+
Sbjct: 294 RGIPM 298
>UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellular
organisms|Rep: 30S ribosomal protein S5 - Zymomonas
mobilis
Length = 233
Score = 35.5 bits (78), Expect = 0.23
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 312 APRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
AP GTGI+ + +F+ GV D T + G++ P N +AT+ A+
Sbjct: 148 APSGTGIIAGGPMRAIFESLGVADVVTKSVGTSNPY-NMIRATFEAL 193
>UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9;
Firmicutes|Rep: 30S ribosomal protein S5 - Mycoplasma
mobile
Length = 243
Score = 34.7 bits (76), Expect = 0.40
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PAP+G GI+ + + + ++AG D YT + GS N KA + A+
Sbjct: 177 PAPKGKGIIASNSVRAVVELAGYTDIYTKSYGSRSK-ENVVKAVFDAL 223
>UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3;
Fusobacterium nucleatum|Rep: 30S ribosomal protein S5 -
Fusobacterium nucleatum subsp. nucleatum
Length = 164
Score = 34.3 bits (75), Expect = 0.53
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTG++ +++ ++ GV D T +GS N A+AT A+
Sbjct: 96 PAYEGTGVIAGSASREILELVGVHDILTKIKGSRNK-HNVARATVEAL 142
>UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Oceanobacillus
iheyensis
Length = 167
Score = 33.9 bits (74), Expect = 0.70
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKAT 184
PA GTG++ + + ++AGV D T + GS P+ N +AT
Sbjct: 99 PAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPI-NMIRAT 141
>UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7;
Chlamydiaceae|Rep: 30S ribosomal protein S5 -
Chlamydophila abortus
Length = 165
Score = 33.9 bits (74), Expect = 0.70
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTGIV + + +MAGV++ + GS P+ N KA + A+
Sbjct: 101 PAKPGTGIVAGSRIRLILEMAGVKNIVAKSLGSNNPM-NQVKAAFKAL 147
>UniRef50_Q2GEC2 Cluster: 30S ribosomal protein S5; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S5 - Neorickettsia sennetsu (strain Miyayama)
Length = 172
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGST 214
PAP GTGIV +K +M GV D + GS+
Sbjct: 99 PAPEGTGIVAGGAMRKFCEMLGVSDIIAKSYGSS 132
>UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32;
Bacteria|Rep: 30S ribosomal protein S5 - Mesoplasma
florum (Acholeplasma florum)
Length = 206
Score = 33.1 bits (72), Expect = 1.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKAT 184
PA GTG++ + + ++AG+ D Y + G P+ N +AT
Sbjct: 130 PAKPGTGVIAGGPARAVIELAGIADVYAKSLGRNNPI-NMIRAT 172
>UniRef50_Q2PC93 Cluster: SCO-spondin precursor; n=4; Eukaryota|Rep:
SCO-spondin precursor - Gallus gallus (Chicken)
Length = 5255
Score = 32.7 bits (71), Expect = 1.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 292 CVCASS*KAFSNGWCTGLLHLSSWFNWPLGKFC----*SHICCHSPHICLPH 149
CVC S+ C GLL LS W W C SH+ +PH+ + H
Sbjct: 4519 CVCQDGALQCSSEGCQGLLPLSPWSEWTPCSTCLPLFPSHLGDATPHVSVQH 4570
>UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellular
organisms|Rep: 30S ribosomal protein S5 - Synechocystis
sp. (strain PCC 6803)
Length = 173
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTG++ + + ++AGV++ GS PL N A+A A+
Sbjct: 105 PAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSNNPLNN-ARAAINAL 151
>UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11;
Bacteria|Rep: 30S ribosomal protein S5 - Nitrosomonas
europaea
Length = 177
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKAT 184
PA GTGI+ + +F++ GV + GST P N +AT
Sbjct: 108 PASEGTGIIAGGPMRAIFEVMGVHNILAKCLGSTNPY-NIVRAT 150
>UniRef50_UPI0000ECCD29 Cluster: UPI0000ECCD29 related cluster; n=2;
Gallus gallus|Rep: UPI0000ECCD29 UniRef100 entry - Gallus
gallus
Length = 3883
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 292 CVCASS*KAFSNGWCTGLLHLSSWFNWPLGKFC----*SHICCHSPHICLPH 149
CVC S+ C GLL LS W W C SH+ +PH+ + H
Sbjct: 3257 CVCQDGALQCSSEGCQGLLPLSPWSEWTPCSTCLPLFPSHLGDVTPHVSVQH 3308
>UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellular
organisms|Rep: 30S ribosomal protein S5 - Gloeobacter
violaceus
Length = 223
Score = 32.3 bits (70), Expect = 2.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYA 178
PA GTG++ + + ++AG+++ + GS PL N A A
Sbjct: 154 PASGGTGVIAGGAVRTVLELAGIKNVLAKSLGSKSPLNNARAAADA 199
>UniRef50_Q2G3B0 Cluster: Putative uncharacterized protein; n=1;
Novosphingobium aromaticivorans DSM 12444|Rep: Putative
uncharacterized protein - Novosphingobium
aromaticivorans (strain DSM 12444)
Length = 435
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 175 GSICGFSKISQGAS*TTS*GVAVLYTSHLKK--LFRNWR 285
GS+CGF +S GA G+ +L T ++K F NWR
Sbjct: 233 GSVCGFFSLSSGAFLALLIGLGILVTDWVQKKVQFLNWR 271
>UniRef50_Q7UN03 Cluster: 30S ribosomal protein S5; n=3;
Bacteria|Rep: 30S ribosomal protein S5 - Rhodopirellula
baltica
Length = 177
Score = 31.9 bits (69), Expect = 2.8
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
IPA GTGI+ + + + G+ D T + G+ P+ KAT A+
Sbjct: 107 IPAGAGTGIIAGQAVRAVCEACGIHDILTKSYGTNNPV-TLVKATLDAM 154
>UniRef50_A7CTW8 Cluster: Regulatory protein LacI; n=1; Opitutaceae
bacterium TAV2|Rep: Regulatory protein LacI -
Opitutaceae bacterium TAV2
Length = 342
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 285 APVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWR 133
AP K+ Q G+Q + G +G+F + +AAI Y+ L P++ R
Sbjct: 122 APQLGKILQTRGIQGLLFAPLPKHGKIGDFDFSPFAAITFGYSLLAPQIHR 172
>UniRef50_A4BPE7 Cluster: Putative uncharacterized protein; n=1;
Nitrococcus mobilis Nb-231|Rep: Putative uncharacterized
protein - Nitrococcus mobilis Nb-231
Length = 221
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 228 ARGSTGPLGNFAKATYAAIPHTYAYLTPKLWRDIP 124
+R PL FAK YAA+ +A LTP+L + +P
Sbjct: 90 SRFRADPLDQFAKRVYAALYRYHAELTPRLRQILP 124
>UniRef50_Q7MTN0 Cluster: 30S ribosomal protein S5; n=32;
Bacteria|Rep: 30S ribosomal protein S5 - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 172
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTG+ + + GV D ++GS+ P N KAT A+
Sbjct: 103 PATTGTGVKAGGAMRAVLDSVGVTDVLAKSKGSSNP-HNLVKATIQAL 149
>UniRef50_Q4FLN5 Cluster: 30S ribosomal protein S5; n=4;
Rickettsiales|Rep: 30S ribosomal protein S5 -
Pelagibacter ubique
Length = 170
Score = 31.1 bits (67), Expect = 4.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -3
Query: 312 APRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
AP+GTGI+ + + ++ G++D + G++ P N +AT A+
Sbjct: 100 APKGTGIIAGGPVRAVCEVLGIKDIVAKSMGTSNP-HNMIRATMKAL 145
>UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128;
Bacteria|Rep: 30S ribosomal protein S5 - Mycobacterium
bovis
Length = 220
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
PA GTG++ + + + AGV D + GS + N AT AA+
Sbjct: 129 PASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAI-NVVHATVAAL 175
>UniRef50_UPI0000D9BAAC Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 174
Score = 30.7 bits (66), Expect = 6.5
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -3
Query: 276 PKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLWRDIPLTKSP 109
P+K FQ AG Q C+ GS P +AT + P R PLT+SP
Sbjct: 34 PRKSFQEAGEQGCWAPHAGSGLPGVPAPRATRPRPARGGSARLPPPTRSSPLTRSP 89
>UniRef50_A4S3U8 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 148
Score = 30.7 bits (66), Expect = 6.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
+PAP G GIV + + +AG+++ GS P N +A +AA+
Sbjct: 87 LPAPSGDGIVANDTVEAICTLAGIKNIKAKIHGSHHP-HNTVRAVFAAL 134
>UniRef50_Q7R8F0 Cluster: Receptor protein kinase, putative, 5'
partial-related; n=3; Plasmodium|Rep: Receptor protein
kinase, putative, 5' partial-related - Plasmodium yoelii
yoelii
Length = 535
Score = 30.7 bits (66), Expect = 6.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 247 TGLLHLSSWFNWPLGKFC*SHICCHSPHICLP 152
TG +H SS+ P+ FC ICC SP C+P
Sbjct: 363 TGAIHYSSYI--PI--FCIPSICCISPIFCIP 390
>UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC004A UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 312 APRGTGIVFAPVPKKLFQMAGV 247
APRGTG V A VPKKL +A +
Sbjct: 151 APRGTGTVSASVPKKLPLLASI 172
>UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_138, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 340
Score = 30.3 bits (65), Expect = 8.6
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PA GTG++ + + +MAGV++ S L N A+AT A+ +
Sbjct: 272 PASPGTGVIAGGAVRIVLEMAGVENALGKQIRSKNALNN-ARATVVAVQKMRQFSDVARE 330
Query: 135 RDIPL 121
R IP+
Sbjct: 331 RGIPM 335
>UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2;
Deinococcus|Rep: 30S ribosomal protein S5 - Deinococcus
radiodurans
Length = 196
Score = 30.3 bits (65), Expect = 8.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATY 181
PA GTG++ VP+ + ++AG+ + + GS + N A A +
Sbjct: 104 PAGPGTGVIAGTVPRSIAELAGITNMLSKELGSRNKV-NVAYAVF 147
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,932,115
Number of Sequences: 1657284
Number of extensions: 6049504
Number of successful extensions: 14405
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 14091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14402
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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