Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0605
         (320 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   2.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   3.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   7.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   7.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.3  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   7.3  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   7.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    19   9.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    19   9.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    19   9.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    19   9.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 297 GIVFAPVPKKLFQ 259
           GI+F P+P K ++
Sbjct: 768 GILFVPIPNKYYE 780


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 243 DCYTSARGSTGPLGNFAKAT 184
           D Y    G TG +GN  KAT
Sbjct: 491 DEYVHRIGRTGRVGNKGKAT 510


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 4/8 (50%), Positives = 5/8 (62%)
 Frame = -2

Query: 310 PSWYWNCV 287
           P W W C+
Sbjct: 54  PQWTWQCI 61


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 141 LWRDIPLTKSPYSE 100
           +W   PLT+SPY E
Sbjct: 418 MWSS-PLTESPYFE 430


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 265 FSNGWCTGLL 236
           F+NGW  G L
Sbjct: 475 FTNGWANGTL 484


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 302 VLELCLRQFLKSFFKWLVYRTATPQ 228
           + + C RQF KS+   +  RT T +
Sbjct: 81  ICKYCNRQFTKSYNLLIHERTHTDE 105


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 311 PLVVLELCLRQFLKSFFK 258
           PL+V+E C R  L+++ +
Sbjct: 528 PLLVVEYCSRGDLQTYLR 545


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 124 RDVPPQFRSEVGICVGNGSICG 189
           R V P F+++  IC      CG
Sbjct: 96  RKVLPNFKTDEPICPDGKLSCG 117


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 124 RDVPPQFRSEVGICVGNGSICG 189
           R V P F+++  IC      CG
Sbjct: 103 RKVLPNFKTDEPICPDGKLSCG 124


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 4/5 (80%), Positives = 4/5 (80%)
 Frame = -2

Query: 304 WYWNC 290
           WYW C
Sbjct: 30  WYWQC 34


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 145 RSEVGICVGNGSICG 189
           +S  G+C   GS CG
Sbjct: 614 QSTEGVCNDAGSYCG 628


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,013
Number of Sequences: 336
Number of extensions: 1523
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6048897
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)