Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0605
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    96   1e-21
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   0.40 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   2.8  
SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.8  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    24   5.0  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   6.6  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   6.6  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    23   8.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    23   8.7  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    23   8.7  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    23   8.7  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 95.9 bits (228), Expect = 1e-21
 Identities = 40/74 (54%), Positives = 52/74 (70%)
 Frame = -3

Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
           +PAPRG G+V APV K+  Q+AG++DCYT +RGST  LGNF KA +AA   TY  LTP L
Sbjct: 169 VPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNL 228

Query: 138 WRDIPLTKSPYSEF 97
           W + P  ++P  E+
Sbjct: 229 WAERPFGQTPIEEY 242


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 272 KSFFKWLVYRTATPQLVVQL 213
           +S F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 288  FAPVPKKLFQMAGVQDCYTSARGSTGPLGNF 196
            FAPVP     ++ + + ++   GS  PLG F
Sbjct: 2413 FAPVPMTKPILSSLPEVFSKHNGSAIPLGRF 2443


>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 167 WGMAAYVALAKFPKGPVEPRAEV*QSCTPAI*KSFLGTGANTIPVPRGAGI 319
           W + A  +LA+FP  P+E       +  P    S   + A + PV   AG+
Sbjct: 26  WDLKASKSLARFPYTPLESLLAPISAFHPTYLNSAAPSKAQSHPVLLAAGV 76


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 185 HMLPFPTHMPTSLLNCGGT 129
           H +P   HM T+  +CGGT
Sbjct: 268 HFIPPSFHMQTTCDSCGGT 286


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 95  LNSEYGDLVSGMSLHNLGVR*AYVWGMAAYVALA 196
           LN+ YG+ VS +  +NLG R A   G++A + +A
Sbjct: 314 LNTPYGEPVSQVLYNNLGKRGAV--GVSAVLIIA 345


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 99  TLSMET*SAGCPSTI*E*GRHMCGEWQHMWL*QNFPRGQLNHELRCSSPVHQPFEK 266
           TLS  + S G P  +   GRH    +   W+ Q F   + +     S   H P ++
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDPIQR 514


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 246 QDCYTSARGSTGPLGNFAKATYAA 175
           +D  T+  G  GP+G F +A Y +
Sbjct: 355 KDLCTNQFGKLGPVGTFDEAVYTS 378


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 210  PLGNFAKATYAAIPHTYAYLTPKLWRDI 127
            P   F+K  Y  IPH Y  L  K W  +
Sbjct: 1138 PAIGFSKEYYGIIPHLYGNL--KFWASL 1163


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = -1

Query: 200 ILLKPHMLPFPTHMPTSLLN-----CGG 132
           + LKP   P+PT  PT ++      CGG
Sbjct: 432 LYLKPPSSPWPTRPPTEIITSFCLICGG 459


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 252 GVQDCYTSARGSTGPLGNFAK 190
           G+ DC  SARG+   +  F+K
Sbjct: 250 GLNDCLLSARGAAAVVDAFSK 270


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 162 YAYLTPKLWRDI 127
           YAY TP+ WR I
Sbjct: 241 YAYNTPEFWRQI 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,264
Number of Sequences: 5004
Number of extensions: 24878
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)