Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0605
         (320 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                      100   5e-22
07_01_0756 + 5819367-5820038,5820847-5821005                           96   6e-21
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     48   1e-06
12_02_0952 - 24731799-24731901,24732169-24732231,24732941-247339...    27   3.3  
06_01_0062 - 529833-530917,531392-531434                               27   3.3  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    27   4.3  
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477...    26   7.6  
07_01_0373 + 2783596-2784933                                           26   7.6  
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    26   7.6  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 99.5 bits (237), Expect = 5e-22
 Identities = 42/74 (56%), Positives = 54/74 (72%)
 Frame = -3

Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
           +PAPRG+GIV A VPKK+ Q AG++D +TS+RGST  LGNF KAT+  +  TY +LTP  
Sbjct: 179 VPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDF 238

Query: 138 WRDIPLTKSPYSEF 97
           WRD    KSP+ E+
Sbjct: 239 WRDTKFVKSPFQEY 252


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 40/74 (54%), Positives = 54/74 (72%)
 Frame = -3

Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
           +PAPRG+GIV A VPKK+ Q AG++D +TS+RGST  LGNF KAT+  +  TY +LTP  
Sbjct: 182 VPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDF 241

Query: 138 WRDIPLTKSPYSEF 97
           WR+    K+P+ E+
Sbjct: 242 WRETRFIKTPFQEY 255


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = -3

Query: 309 PRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAK 190
           P G+ +V   VPKK+ + AG++D +TS+RGST  L NF K
Sbjct: 70  PMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNFVK 109


>12_02_0952 -
           24731799-24731901,24732169-24732231,24732941-24733980,
           24734094-24734339
          Length = 483

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -2

Query: 283 ASS*KAFSNGWCTGLLHLSSW---FNWPLGKFC*SHICCHSPHICLPHS 146
           +S+  AF   WC   +H S W   F    GKF    IC  +    LPH+
Sbjct: 273 SSAGSAFIKSWCLVDIHESRWIRYFTMEAGKFW--DICSAANQPLLPHA 319


>06_01_0062 - 529833-530917,531392-531434
          Length = 375

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 204 GNFAKATYAAIPHTYAYLTPKLWRD 130
           GN  +A Y  +P     LTP+ WRD
Sbjct: 102 GNVDEAAYTRVPDPRIGLTPQGWRD 126


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 210 PLGNFAKATYAAIPHTYAYLTPKLWRDIPLTKSPYS 103
           P+G  AK TYA++  T  + + +    IPL K+  S
Sbjct: 281 PMGEPAKQTYASVLRTKGHPSHQAIHSIPLNKATAS 316


>10_08_0324 + 16747117-16747330,16747432-16747559,16747675-16747744,
            16747832-16747988,16748089-16748701,16749132-16749653,
            16749686-16750279,16750359-16750709,16750808-16751395
          Length = 1078

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 258  MAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYL 151
            +AGV D   +  GS GPL      ++  I H Y +L
Sbjct: 992  VAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFL 1027


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 195 AKATYAAIPHTYAYLTPKLWRDIPLTKSPYSEF 97
           A   ++A+PHT+A   P L    P+  +P   F
Sbjct: 277 AAGHHSAMPHTFASPAPHLANITPIAMAPAQHF 309


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 189 ATYA-AIPHTYAYLTPKLWRDIPLTKSPYSEFKV*DSHCI 73
           ATYA A+      + P    D+   +SP  E K  D HCI
Sbjct: 58  ATYAVAVSRDPGRVPPAFLPDVEDAESPIHEIKRKDHHCI 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,000
Number of Sequences: 37544
Number of extensions: 177341
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)