Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0605
         (320 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              124   2e-29
SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  124 bits (299), Expect = 2e-29
 Identities = 54/74 (72%), Positives = 61/74 (82%)
 Frame = -3

Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
           IPAPRGTGIV APVPKKL QMAG++DCYTS RG T  LGNFAKAT+AAI  TYAYLTP +
Sbjct: 144 IPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDM 203

Query: 138 WRDIPLTKSPYSEF 97
           W++   TK+PY EF
Sbjct: 204 WKETVFTKTPYQEF 217


>SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 148 SEVGICVGNGSICGFSKISQGAS*TTS*GVAVLYTSHL 261
           S++G C+G   + GF   + GAS T + GV  + +S L
Sbjct: 50  SDMGCCIGAPFLNGFCIRNTGASATAALGVNGIVSSFL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,755,643
Number of Sequences: 59808
Number of extensions: 188163
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)