Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0605
         (320 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   119   5e-28
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    29   0.99 
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    29   0.99 
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    28   1.3  
L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily as...    28   1.7  
L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily ass...    28   1.7  
AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical...    25   9.2  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    25   9.2  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  119 bits (286), Expect = 5e-28
 Identities = 52/71 (73%), Positives = 60/71 (84%)
 Frame = -3

Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
           IPAPRGTGIV APVPKKL  MAG++DCYT+A+GST  LGNFAKATYAA+  TY+YLTP L
Sbjct: 192 IPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDL 251

Query: 138 WRDIPLTKSPY 106
           W++  L KSPY
Sbjct: 252 WKEEALEKSPY 262


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 309 PRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
           PRG G+   P   K+ +  G++D Y    GST    N+   T+A +
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST---KNYLALTHAFV 269


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 309 PRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAI 172
           PRG G+   P   K+ +  G++D Y    GST    N+   T+A +
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST---KNYLALTHAFV 269


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 287 LRQFLKSFFKWLVYRTATPQLVVQLAPWEILLKPHMLPFPTHMPTSLLNCGGT 129
           LR+  K FFK LV +  TP +++   P  I++   +      +P+ ++ C  T
Sbjct: 243 LRKHHKQFFKTLVLQITTPTIIL-FIPITIIIFLPLFHLDVSLPSGVMLCSFT 294


>L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform a protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 231 SARGSTG-PLG-NFAKATYAAIPHTYA-YLTPKLWRDIPLTKSPYSEF 97
           SA GS G PLG  F   T   +P   + Y     W+D P T   Y+EF
Sbjct: 349 SAYGSLGDPLGWPFQTCTEMVMPLCGSGYPNDFFWKDCPFTSEKYAEF 396


>L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform b protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 231 SARGSTG-PLG-NFAKATYAAIPHTYA-YLTPKLWRDIPLTKSPYSEF 97
           SA GS G PLG  F   T   +P   + Y     W+D P T   Y+EF
Sbjct: 410 SAYGSLGDPLGWPFQTCTEMVMPLCGSGYPNDFFWKDCPFTSEKYAEF 457


>AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical
           protein Y57A10A.24 protein.
          Length = 534

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 211 PLGKFC*SHICCHSPHIC 158
           PLG FC   ICC  P  C
Sbjct: 65  PLGAFCHRGICCVPPPQC 82


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 272 KSFFKWLVYRTATPQLVVQLAPWEILLKPHMLPFPTHMPTSLLNC 138
           + FFK L+Y+  +P     + P  ++L         ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,211,770
Number of Sequences: 27780
Number of extensions: 143295
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)