Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0605
(320 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 97 2e-21
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 96 4e-21
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 96 4e-21
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 96 4e-21
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 96 4e-21
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 96 4e-21
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 36 0.005
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 30 0.30
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 30 0.30
At2g07777.1 68415.m00893 expressed protein 28 1.6
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 26 4.9
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 26 6.5
At3g61720.1 68416.m06919 C2 domain-containing protein contains I... 26 6.5
At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative (CH... 25 8.6
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 25 8.6
At1g53900.1 68414.m06136 eukaryotic translation initiation facto... 25 8.6
At1g53890.1 68414.m06135 expressed protein contains Pfam profile... 25 8.6
At1g53880.1 68414.m06133 eukaryotic translation initiation facto... 25 8.6
At1g53870.2 68414.m06132 expressed protein contains Pfam profile... 25 8.6
At1g53870.1 68414.m06131 expressed protein contains Pfam profile... 25 8.6
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac... 25 8.6
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 181 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 240
Query: 138 WRDIPLTKSPYSE 100
W++ +KSPY E
Sbjct: 241 WKETRFSKSPYQE 253
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 96.3 bits (229), Expect = 4e-21
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 190 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 249
Query: 138 WRDIPLTKSPYSE 100
W++ ++SPY E
Sbjct: 250 WKETRFSRSPYQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 96.3 bits (229), Expect = 4e-21
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 189 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 248
Query: 138 WRDIPLTKSPYSE 100
W++ ++SPY E
Sbjct: 249 WKETRFSRSPYQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 96.3 bits (229), Expect = 4e-21
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 189 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 248
Query: 138 WRDIPLTKSPYSE 100
W++ ++SPY E
Sbjct: 249 WKETRFSRSPYQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 96.3 bits (229), Expect = 4e-21
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 189 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 248
Query: 138 WRDIPLTKSPYSE 100
W++ ++SPY E
Sbjct: 249 WKETRFSRSPYQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 96.3 bits (229), Expect = 4e-21
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = -3
Query: 318 IPAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKL 139
+PAPRG+GIV A VPKK+ Q AG+ D +TS+RGST LGNF KAT+ + TY +LTP+
Sbjct: 189 VPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEF 248
Query: 138 WRDIPLTKSPYSE 100
W++ ++SPY E
Sbjct: 249 WKETRFSRSPYQE 261
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -3
Query: 315 PAPRGTGIVFAPVPKKLFQMAGVQDCYTSARGSTGPLGNFAKATYAAIPHTYAYLTPKLW 136
PA GTG++ + + +MAGV++ GS L N A+AT AA+ +
Sbjct: 235 PASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN-ARATLAAVQQMRQFRDVAQE 293
Query: 135 RDIPL 121
R IP+
Sbjct: 294 RGIPM 298
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 314 LPLVVLELCLRQFLKSFFKWLVYRTATPQLVVQLAPWE--ILLKPHMLPFPTH 162
+ ++++ LCL L K ++ RTAT + +PW ++ H L TH
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTH 53
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 30.3 bits (65), Expect = 0.30
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 314 LPLVVLELCLRQFLKSFFKWLVYRTATPQLVVQLAPWE--ILLKPHMLPFPTH 162
+ ++++ LCL L K ++ RTAT + +PW ++ H L TH
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTH 53
>At2g07777.1 68415.m00893 expressed protein
Length = 262
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -1
Query: 317 FLPLVVLELCLRQFLKSFFKWLVYRTATPQLVVQLAPWEILLKPHML 177
FL L+V +CL + LK + + + LV Q++ + +LL+ H+L
Sbjct: 36 FLILLVFSICLFRSLKQYLGKRMTQWCYLALVCQISLFLVLLRSHIL 82
>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (IRX5)
nearly identical to cellulose synthase [Arabidopsis
thaliana] GI:27462651; contains Pfam profile PF03552:
Cellulose synthase
Length = 1049
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 258 MAGVQDCYTSARGSTGPLGNFAKATYA--AIPHTYAYL 151
+AGV D + GS GPL F K +A I H Y +L
Sbjct: 963 VAGVSDAINNGYGSWGPL--FGKLFFAFWVIVHLYPFL 998
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 180 HMWL*QNFPRGQLNHELRCSSPV 248
HMW+ N+ G +NH L V
Sbjct: 165 HMWINGNYAEGNINHVLNSGDEV 187
>At3g61720.1 68416.m06919 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 795
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -1
Query: 308 LVVLELCLRQFLKS---FFKWLVYRTATP 231
L ++ + LR+ LKS + WL YR TP
Sbjct: 625 LCIVVILLREILKSPRQTYNWLFYRNVTP 653
>At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative
(CHX17) similar to Na+/H+-exchanging protein slr1595 -
Synechocystis sp., EMBL:D90902; monovalent cation:proton
antiporter family 2 (CPA2) member, PMID:11500563
Length = 820
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 314 LPLVVLELCLRQFLKSFFKWLVYRTATPQLVVQLAPWEILLKPHML 177
LPL++L++C+ L +L+ P+++ ++ ILL P L
Sbjct: 30 LPLLILQICIVLLLTRLLAFLLRPLRQPRVIAEIV-GGILLGPSAL 74
>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 894
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 169 GNGSICGFSKISQGAS*TTS*GVAVLYTSHLKKLFRNW---RKHNSSTTRG 312
GNG++ IS S +++ AVL S L +NW R HN+S G
Sbjct: 738 GNGTVEPNHSISSSMSDSSNSSGAVLLGSSSASLEQNWNQIRTHNNSGESG 788
>At1g53900.1 68414.m06136 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|Q64270 Translation initiation factor eIF-2B alpha
subunit {Rattus norvegicus}; contains Pfam profiles
PF04525: Protein of unknown function (DUF567), PF01008:
Initiation factor 2 subunit family
Length = 644
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 241 VLYTSHLKKL--FRNWRKHNSSTTR 309
+L+T KKL F++W+ +NS+ TR
Sbjct: 79 ILFTLRQKKLGLFKSWKGYNSTGTR 103
>At1g53890.1 68414.m06135 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 217
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 241 VLYTSHLKKL--FRNWRKHNSSTTRGR 315
+L+T KKL F++W +NS+ TR R
Sbjct: 92 ILFTLRQKKLGFFKSWEGYNSTGTRFR 118
>At1g53880.1 68414.m06133 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|Q64270 Translation initiation factor eIF-2B alpha
subunit {Rattus norvegicus}; contains Pfam profiles
PF04525: Protein of unknown function (DUF567), PF01008:
Initiation factor 2 subunit family
Length = 637
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 241 VLYTSHLKKL--FRNWRKHNSSTTR 309
+L+T KKL F++W+ +NS+ TR
Sbjct: 79 ILFTLRQKKLGLFKSWKGYNSTGTR 103
>At1g53870.2 68414.m06132 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 202
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 241 VLYTSHLKKL--FRNWRKHNSSTTRGR 315
+L+T KKL F++W +NS+ TR R
Sbjct: 92 ILFTLRQKKLGFFKSWEGYNSTGTRFR 118
>At1g53870.1 68414.m06131 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 217
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 241 VLYTSHLKKL--FRNWRKHNSSTTRGR 315
+L+T KKL F++W +NS+ TR R
Sbjct: 92 ILFTLRQKKLGFFKSWEGYNSTGTRFR 118
>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
GI:8515709
Length = 675
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 76 TMTVLNFEL*VWRLSQRDVPPQFRSEVGICVGNGSICGFS 195
T+ F+ V+ L +RD+ QF SEV G G FS
Sbjct: 519 TLRCSQFQTNVFCLRERDLLEQFTSEVAQLQGRGESREFS 558
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,879,671
Number of Sequences: 28952
Number of extensions: 136028
Number of successful extensions: 320
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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