Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0604
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    28   1.0  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   2.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   4.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.0  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   7.1  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    25   9.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.3  

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = +2

Query: 128 NKPFKQTSGKVVG--AYFVEWGVYPRKFPVDRVPVPNLT--HLLYGFIPICGGDGINDSL 295
           +K FK+ + K V   A  +    Y  +     + +PN T  H+    +P   GDGI   L
Sbjct: 10  SKVFKRNNFKYVAIAASSIGLAAYHIRKDAIALDIPNSTYQHVSKNRVPPTDGDGITKRL 69

Query: 296 KEIEGSFQALQRSCSGREDF-KVSIHDP 376
           KE E +   + +    R DF +V+ +DP
Sbjct: 70  KEFERTV-TVNKDGIFRYDFNQVASNDP 96


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 274 TTTNRNEAVEQMSQVRNRNAVHRE 203
           TTTN+NE++   S  RNR  + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 199 SRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERP 98
           S  + PFD +S+   S+  LEGL    N+    P
Sbjct: 390 SNFYQPFDSISSMVLSKQALEGLELFVNQTDHTP 423


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 644 SHLGNSPINVDTIEELPSLEEVFS 573
           S   +SP +VD + ELPS E VF+
Sbjct: 54  SPTADSPSSVDGVLELPSAENVFA 77


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 5    YQEQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 148
            Y ++  +C ++   +S  ++ VVA  D   ++ +DY +      FK+T
Sbjct: 862  YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 89  SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPRKFP 208
           S L PLD+S  EK         K      +E G+YP++ P
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESP 380


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 342 AVKTSRFLSTIPGRPCRNLKRDYRP 416
           A++ +R++S I  +PC  +  DYRP
Sbjct: 275 ALQFARWISEIHKQPCHVVYTDYRP 299


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 197 RKFPVDRVPVPNLTHLLYGFIPI 265
           RK  V+ VP P L   + GF P+
Sbjct: 251 RKLAVNMVPFPRLHFFMVGFAPL 273


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 524  FFFFTDKTKRDRFVASVKRLPPNLEVLR 607
            FF F  + + D+F+ + K L    EVLR
Sbjct: 3386 FFLFEKREQADQFINNFKLLRKQYEVLR 3413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,095
Number of Sequences: 5004
Number of extensions: 64372
Number of successful extensions: 213
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)