Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0604
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0367 - 28331479-28332358,28332432-28332988,28333454-283336... 30 1.8
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 29 3.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 29 3.2
02_01_0679 - 5048653-5051394 29 4.2
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 5.5
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 5.5
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 28 7.3
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 27 9.7
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 9.7
05_01_0129 - 872127-872681,872762-873070,873180-873347 27 9.7
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 9.7
03_02_0028 - 5118621-5119448 27 9.7
01_05_0272 + 20280557-20281220,20281799-20281938,20282035-202821... 27 9.7
>02_05_0367 -
28331479-28332358,28332432-28332988,28333454-28333671,
28333748-28333831,28334199-28334373,28334572-28334574
Length = 638
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 169 LLRRMGCVS*KVPCGPRSGSEPDSFALRLH 258
L+R +GC + VPC P SG+E F + L+
Sbjct: 173 LIRPVGCGTEHVPCEPHSGAELGIFYIALY 202
>11_06_0542 + 24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 228 GTGTRSTGNFLGYTPHSTK*APTTFPEVCLKG 133
G GT S G+ YT H K P +CL+G
Sbjct: 1004 GEGTPSNGDLPEYTSHCLKYRPKLLENLCLQG 1035
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 29.1 bits (62), Expect = 3.2
Identities = 27/89 (30%), Positives = 36/89 (40%)
Frame = -3
Query: 575 SRRQRNDHAWFCR*KKRRDRPMSSHQLKVRPLSQYSLVSTASAARSYLCRARSRTIIPFE 396
+R QR D FC K RRD ++ + V+P Q + A A RS R R I P
Sbjct: 200 ARAQRGDVLVFCIGKGRRDDAGATEKW-VQPRQQLDKLLQAPARRSRRGRGRCAGIYP-- 256
Query: 395 VSAGPPRDRG*KP*SLHGRCMNVVVLENC 309
P + G L RC ++ C
Sbjct: 257 ---SPSLEHGTSEEELWRRCSQRRAVQRC 282
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 214 VHRELSRIHTPFDEVSAHHFSRSLLEGLIFLTNRIIERPQMATISVSY 71
+ REL IH +V +S +LEG I ++ R + T SY
Sbjct: 43 IERELDMIHHFLSQVGTKIYSNKVLEGWIVRVRKVAYRVEDITDEYSY 90
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 194 PRKFPVDRVPVPNLTHLLYGFIPICGG 274
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 419 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFF 532
NE G +G+ MQ+ Q + G +L I W L PFF+
Sbjct: 240 NEKRAGLWGRCMQIIYQTSAGATMLTDITFWGLLVPFFY 278
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 338 SGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM 454
S ED +VS H P A + SSW P G G+++
Sbjct: 350 SSPEDPRVSCHAPNMAQMQEDSISSSWEMPQGGPLGEIL 388
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 156 KWWALTSSNGVCILESSLWTAFRFRT*LICSTASFRFVVVM 278
K W L GV I+E WT++R R L+ A F ++
Sbjct: 226 KIWRLLRPGGVFIMEPQPWTSYR-RNRLVSEVAKENFNTIL 265
>06_03_0541 - 21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 95 LRPLDYSIGEKN---KPFKQTSGKVVGAYFVEW--GVYPRKFPVDRVPVPNLTHLLYGFI 259
L PLD +G+ +P + G ++ +Y W G + F D + H L GF+
Sbjct: 1350 LPPLDKCVGDVQGYLEPLEDDEG-ILESYAKSWTSGALDKAFQRDAMSFTVARHHLSGFV 1408
Query: 260 PICGGDG 280
C G G
Sbjct: 1409 FQCSGSG 1415
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 152 GKVVGAYFVEWGVYPRKFPVDRVPV 226
G+ G + V WG+ R+ PV +PV
Sbjct: 78 GQAAGNFLVAWGLASRRLPVAPLPV 102
>03_05_0937 - 28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 280 AITTTNRNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSAHHFSRSL 143
A+ T NE EQM +V ++ HR+L++I + D+ S + S L
Sbjct: 922 ALKNTGLNE--EQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCL 965
>03_02_0028 - 5118621-5119448
Length = 275
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 266 CGGDGINDSLKEIEGSFQALQRSCSGREDFKVSI 367
CGG G D + + GSF ++RS R DF+ S+
Sbjct: 169 CGGSGEVDGVV-VAGSFAVVKRSDDPRADFRRSM 201
>01_05_0272 +
20280557-20281220,20281799-20281938,20282035-20282124,
20282249-20282354,20282544-20282695,20282776-20282873,
20282948-20283086,20283223-20283321,20283411-20283575
Length = 550
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 607 SKNFQVWRKSFHGGNETITLGFVGKKKEGIGQCPATN*R*DL*ASIR-LFQLHQLPEVTF 431
+ NF RK GG ++ LGF+G + + + A+ + + A ++ L ++H + V
Sbjct: 243 TSNFDEKRKIGEGGYGSVYLGFIGTHEIAVKKMKASKSK-EFFAELKVLCKIHHINVVEL 301
Query: 430 VGLVPG 413
+G G
Sbjct: 302 IGYAAG 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,614
Number of Sequences: 37544
Number of extensions: 453281
Number of successful extensions: 1265
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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