Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0604
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_14175| Best HMM Match : GBP_repeat (HMM E-Value=3.8)                30   1.9  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   4.3  
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              29   4.3  
SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)                    28   5.7  
SB_22800| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   27   9.9  
SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)                    27   9.9  
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   27   9.9  

>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 217 AVHRELSRIHTPFDEVSAHHFSRSLLEGLIFL-TNRIIER 101
           ++H  + + H   +E     +SR +LEG+++L TNRI+ R
Sbjct: 2   SIHEHIKQ-HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_14175| Best HMM Match : GBP_repeat (HMM E-Value=3.8)
          Length = 300

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 449 LMQLKQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRFVASVKRLPPNLEVLRW 610
           L+   Q NT  +VL +   W++ D      D    + ++A ++    N+ V RW
Sbjct: 80  LLYQNQTNTDPRVLDNYAMWSIIDDVISVLDSNYTNAYMAFMRSKVGNMTVKRW 133


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/60 (25%), Positives = 24/60 (40%)
 Frame = +2

Query: 263 ICGGDGINDSLKEIEGSFQALQRSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNF 442
           ICGG    D +K+ E    +L R  S  E  ++  H  W++         +  +    NF
Sbjct: 767 ICGGPLSPDEMKKFEDITFSLARKTSSEEMARLPAHKRWSSSSTETSSAKNTEDEVGANF 826


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 389 QKPQKGLSSWNEPYKGNFGQLMQLKQANTGLKVLPSIGGW 508
           QK +  +  WN+     + +   LKQ N  LK L ++GGW
Sbjct: 60  QKNELAMYEWNDDKL--YPRFNALKQKNPELKTLLAVGGW 97


>SB_5758| Best HMM Match : fn3 (HMM E-Value=6.6e-18)
          Length = 1191

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
 Frame = -3

Query: 509  SSHQLKVRPLSQYSLVSTASAARSYLCR------ARSRTIIPFEVSAGPPRDRG*KP*SL 348
            +++++ VRPL+   L ST  +  +  CR      A    + P+ V  G P   G  P  L
Sbjct: 989  TTYRVLVRPLTSTGLGSTLDSTLAETCRCPKFMTAAWSPVPPYTVDTGQPVPSGIIPEIL 1048

Query: 347  HGRCMNVVVLENCPQF 300
                M V++ E C +F
Sbjct: 1049 SN--MLVLICETCKEF 1062


>SB_22800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 500 GGWTLADPFFFFTDKTKRDRFVASVKRLPPN 592
           G WT    +FF+ D +K  RF     +LP N
Sbjct: 4   GSWTSVATWFFYDDSSKTARFSPVSVQLPNN 34


>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 141 LKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQSSTCSWYL 1
           +K LF+SP    + + + P+      ST +   HP +L     S YL
Sbjct: 28  VKCLFYSPNHYCQSVNYFPATQTCLTSTSTHHQHPEDLVYDAGSVYL 74


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 5   YQEQVELCNSDGCSSSEGVEIVVADTDGSH 94
           YQ  V+ CNS GC  S     V  D  G +
Sbjct: 281 YQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)
          Length = 614

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 257 IPICGGDGINDSLKEIEGSFQALQRSCSGRED 352
           +P CG DG      E+  S   +QR C  R D
Sbjct: 63  VPTCGKDGCQCDYLELFSSNNTVQRFCDFRND 94


>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 634 ETPQSMWTPSKNFQVWRKSFHGGNET 557
           E  QS WTP +    W + + GG+ T
Sbjct: 232 EADQSQWTPLEYVANWAQGYDGGSAT 257


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,943,866
Number of Sequences: 59808
Number of extensions: 474383
Number of successful extensions: 1244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)