Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0604
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    28   4.9  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   6.5  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   6.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   6.5  
U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 461  KQANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASV 574
            + AN+G++VL ++GGW  +  F     D  KR +FV S+
Sbjct: 1561 RAANSGVRVLFAVGGWDNSQYFSSVAADSGKRKKFVDSI 1599


>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +2

Query: 296 KEIEGSFQALQRSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLM-QLKQAN 472
           K I G F   + +   R+  ++  H  +         ++   E  +  F ++  + ++AN
Sbjct: 110 KRIVGYFAEFENTALTRKQLQMLTHIIYLFAIPKNGNMTFGGERSRRKFEEMKNEARKAN 169

Query: 473 TGLKVLPSIGGWTLADPFF-FFTDKTKRDRFVASV 574
           + LKV+ SIGG + +  F    +++T R+ FV S+
Sbjct: 170 STLKVMISIGGQSNSRSFSRLVSNETSRNVFVNSI 204


>Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical
           protein C08H9.14 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 434 GNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRFVASVKRL 583
           G F    +  + N GLKV+ SIGG+  + P F      K+ + +AS+  L
Sbjct: 95  GFFDMKRKSMELNRGLKVMVSIGGYE-SSPLFSDVLVKKKKKLIASIALL 143


>U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical
           protein C45E5.2 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 419 NEPYKGNFGQLMQL-KQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRF 562
           N+  KG F  L +L K  N  +K++ SIGGW  +  F       K  RF
Sbjct: 415 NDRGKGRFKNLNRLIKYENLNVKMMFSIGGWADSTNFRSVVADVKIKRF 463


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 RRDRPMSSHQLKVRPLSQYSLVST 456
           R+D+P +   LKV PL+ YS++ T
Sbjct: 636 RQDKPAAVQDLKVEPLNSYSVMLT 659


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 527 RRDRPMSSHQLKVRPLSQYSLVST 456
           R+D+P +   LKV PL+ YS++ T
Sbjct: 636 RQDKPAAVQDLKVEPLNSYSVMLT 659


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 461  KQANTGLKVLPSIGGWTLADPF-FFFTDKTKRDRFVASV 574
            +  N+G++VL ++GGW  +  F     D  KR  FV SV
Sbjct: 1024 RAVNSGVRVLFAVGGWDNSQYFSSVAADSGKRRNFVDSV 1062


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 431 KGNFGQLMQLKQANTGLKVLPSIGGWTLADPFF 529
           +G + ++ +LK  +T LK L S GGW+     F
Sbjct: 113 EGMYRRVNKLKVTDTQLKTLLSFGGWSFGTALF 145


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 265  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 146
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 265  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 146
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 265  NRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHHFSRS 146
            NR+E  E  S+ +  N++H E S   H+ ++  S H+   S
Sbjct: 1301 NRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSS 1341


>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 419 NEPYKGNFGQLMQLKQANTGLKVLPSIGGWTLADPFFFFTDKTKRDRFVASVKRLPPN 592
           +E +  N G  ++LK+  TGL     I GW      +      K+ RF   + R  PN
Sbjct: 172 SETWTCNAGSTLRLKKTVTGLIDAAEIRGWNFNLERYLL---AKQSRFAGHILRRDPN 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,931
Number of Sequences: 27780
Number of extensions: 363375
Number of successful extensions: 997
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)