Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0604
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    31   0.87 
At5g07790.1 68418.m00892 expressed protein                             30   1.5  
At3g28980.1 68416.m03622 expressed protein                             29   2.0  
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ...    29   2.6  
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ...    29   2.6  
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...    28   6.1  

>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 603 RTSKFGGSLFTEATK-RSRLVLSVKKKKGSANVQPPIEGKTFKP 475
           R+S FG S      + R RLVL  +K +   +  PP+  KT KP
Sbjct: 236 RSSTFGSSFGDSGQEERRRLVLEPRKVESGGSETPPVVEKTSKP 279


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 329 RSCSGREDFKVSIHDPWAALQKPQKGLSSWNEPYKGNFGQLMQLKQANTG 478
           + C   + FK S HDP ++ Q   +  S+     KG+   L + K A  G
Sbjct: 336 KHCPSNKTFKGSDHDPHSSGQASSESQSNQTSMEKGSSSSLSEAKSAKKG 385


>At3g28980.1 68416.m03622 expressed protein 
          Length = 445

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 287 DSLKEIEGSFQALQRSCSGREDFKV---SIHDPWAALQKPQKGLSSWNEPYKGNFGQLMQ 457
           ++ K++      L++ C  +E+FKV    +     A +K +KGL S  +   G     MQ
Sbjct: 284 ETSKDVSTFIMNLEKKCPQKEEFKVFFEQLKGTMIAPRKERKGLFSRIKTAAGKISGAMQ 343

Query: 458 LKQANTGLK 484
           + ++  G K
Sbjct: 344 VMRSRIGSK 352


>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 870

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 512 LADPFFFFTDKTKRDRFVASVKRLPPNLEVLRW 610
           L  PF      +  D +V+ + R  PNLEVLR+
Sbjct: 100 LPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRY 132


>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 851

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 512 LADPFFFFTDKTKRDRFVASVKRLPPNLEVLRW 610
           L  PF      +  D +V+ + R  PNLEVLR+
Sbjct: 100 LPGPFLVLCPLSVTDGWVSEINRFTPNLEVLRY 132


>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 295 QTVIDAITTTNRNEA---VEQMSQVRNRNAVHRELSRIHTPFDEV 170
           ++ +D +T  + NE    +  +S+  +  A H E S+I TP DE+
Sbjct: 13  KSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEI 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,732
Number of Sequences: 28952
Number of extensions: 357173
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)