Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0602
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5FHL4 Cluster: PDZ/DHR/GLGF domain protein precursor; ...    35   1.9  
UniRef50_Q3S290 Cluster: SecY-independent transporter protein; n...    33   7.8  

>UniRef50_A5FHL4 Cluster: PDZ/DHR/GLGF domain protein precursor;
           n=1; Flavobacterium johnsoniae UW101|Rep: PDZ/DHR/GLGF
           domain protein precursor - Flavobacterium johnsoniae
           UW101
          Length = 444

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 22/58 (37%), Positives = 35/58 (60%)
 Frame = -2

Query: 254 ERKKQSTHTNNCQSLLRLMNSKFKSKLPTVTAHKAYIA*ISVKCQFVDTCSVECKLTL 81
           E+KK + HT+N +S+ R +N+KFKS   T+   K YI   +V    VD+  ++ KL +
Sbjct: 154 EKKKITVHTDN-ESIRRRLNNKFKSIPITIEKSKPYIYTNAV----VDSVDIKAKLLI 206


>UniRef50_Q3S290 Cluster: SecY-independent transporter protein; n=1;
           Thalassiosira pseudonana|Rep: SecY-independent
           transporter protein - Thalassiosira pseudonana (Marine
           diatom)
          Length = 243

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 287 IYFLCLICHNIIMIFS*FCDIFKVQIIYVCGMKNGS*RSFYCF 415
           IY+LC + + II++F  F D+FK  ++ +  ++     +F+ F
Sbjct: 161 IYYLCYLIYQIIVLFFIFLDLFKTNLLIIKKLRKILYFAFFLF 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,284,885
Number of Sequences: 1657284
Number of extensions: 10522505
Number of successful extensions: 20481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20480
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)