Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0602
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.3  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   2.3  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  

>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +3

Query: 411 AFVSRRPYSQADGE*LVHDSQQLTSNPN*MLFEIVAQTYVI*KXTLLDHSNKIQNYKTQL 590
           AF  +     +D E + HDS+++ S+P         QT+ + K  L D  + I +++  L
Sbjct: 83  AFAKQSSQDISDDELIQHDSRKVISSP-----YSPKQTHTVLK-RLYDRQSVISDHEKLL 136

Query: 591 P*QNILDS*PISDSFAS 641
             QN+ +S  I   F S
Sbjct: 137 TPQNVSNSSQILSPFTS 153


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 212 LLRLMNSKFKSKLPTVTAHKAYIA*ISVKCQFVDTCSVECKLTLC 78
           L  L N+  K K P   AH+A+IA   V         V   +T C
Sbjct: 57  LFTLANASLKQKDPKSNAHEAFIASKIVSGDLKTNLQVNAAITYC 101


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +2

Query: 242 VFFSLQKQCSTEILHIYFLCLICHNIIMIFS*FCDIFKVQIIYVCGMKNGS*RSFYCFRK 421
           VF+ + K    ++   Y LCL+C  + ++   F  +++  I+Y         ++   F  
Sbjct: 54  VFYRISKYSLIDLT--YKLCLLCGIVTLLLFYFSGLYRTTIVYPSRYVQQVNKAMRFFNI 111

Query: 422 QTTIQPS*W 448
           +  I P  W
Sbjct: 112 RLVITPVPW 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,002
Number of Sequences: 5004
Number of extensions: 48938
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)