Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0602
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41143| Best HMM Match : Tropomodulin (HMM E-Value=0.09)             28   5.7  
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)                    28   7.5  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 28   7.5  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.5  
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)        27   9.9  
SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)                 27   9.9  

>SB_41143| Best HMM Match : Tropomodulin (HMM E-Value=0.09)
          Length = 771

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 205 LNNDWQLFVCVDCFFLS 255
           L  DW+LF CVDC+ L+
Sbjct: 229 LIGDWRLFECVDCYDLA 245


>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 457 NHSPSAWLYGRLLTKAVKRSLRSILHPTYINNL 359
           N SPSAW   R     V ++LR+  H TY+N++
Sbjct: 32  NRSPSAWSDYRHQRNKVTKALRA-AHDTYLNDV 63


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 457 NHSPSAWLYGRLLTKAVKRSLRSILHPTYINNL 359
           N SPSAW   R     V ++LR+  H TY+N++
Sbjct: 274 NRSPSAWSDYRHQRNKVTKALRA-AHDTYLNDV 305


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 457 NHSPSAWLYGRLLTKAVKRSLRSILHPTYINNL 359
           N SPSAW   R     V ++LR+  H TY+N++
Sbjct: 526 NRSPSAWSDYRHQRNKVTKALRA-AHDTYLNDV 557


>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 457 NHSPSAWLYGRLLTKAVKRSLRSILHPTYINNL 359
           N SPSAW   R     V ++LR+  H TY+N++
Sbjct: 474 NRSPSAWSDYRHQRNKVTKALRA-AHDTYLNDV 505


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 457 NHSPSAWLYGRLLTKAVKRSLRSILHPTYINNL 359
           N SPSAW   R     V ++LR+  H TY+N++
Sbjct: 610 NRSPSAWSDYRHQRNKVTKALRA-AHDTYLNDV 641


>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
          Length = 372

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 160 AVTVGNFDLNFEFINLNNDWQLFVCVDCF-FLSPKTM*YRN 279
           A TVG   L  E I L+ +W+   CV  F FL   ++ YRN
Sbjct: 34  ADTVGCCSLRVEHIKLHEEWEDKECVVEFDFLGKDSVRYRN 74


>SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 160 AVTVGNFDLNFEFINLNNDWQLFVCVDCF-FLSPKTM*YRN 279
           A TVG   L  E I L+ +W+   CV  F FL   ++ YRN
Sbjct: 284 ADTVGCCSLRVEHIKLHEEWEDKECVVEFDFLGKDSVRYRN 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,357,956
Number of Sequences: 59808
Number of extensions: 350245
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)