Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0602
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28590.1 68415.m03474 protein kinase family protein contains ...    29   2.6  
At4g14590.1 68417.m02245 expressed protein                             27   8.1  

>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 287 YGVFLYYIVFGERKKQSTHTNNCQSLLRLMNSKFKSK 177
           +GV L  ++ G +   +T T N QSL+   N  FK +
Sbjct: 288 FGVVLLELITGRKAYDNTRTRNHQSLVEWANPLFKDR 324


>At4g14590.1 68417.m02245 expressed protein
          Length = 508

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 358 DLKNIAKLREYHNNIMTD*AQEIYMEYFCTTLFLEREKNNLHTQI 224
           DL ++++ RE  N+++++   EIY     +  FL R    + TQ+
Sbjct: 214 DLSHVSEFREIWNDLVSNHCSEIYQLKTSSRYFLLRITPEMETQL 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,482
Number of Sequences: 28952
Number of extensions: 236053
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)