Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0600
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.1  
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    27   3.7  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   6.5  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    25   8.6  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -1

Query: 166 SAYWYRAL----NKYTCYFHLISHQKGPCDCR 83
           SAYWY +     N YT  +H+  + K P  CR
Sbjct: 346 SAYWYYSAYNSPNLYTKNYHIRLNNKPPASCR 377


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 205 IYQWNLDRKVLSKGRN 252
           +Y WNL RK +S+G N
Sbjct: 131 VYGWNLKRKFISRGAN 146


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 52  YMFLTTFIRIIDSRMALFGEILDESSKYICLTLDTSKPRICM 177
           Y+FL       DS ++L+   L + S  + L  DTS P I +
Sbjct: 37  YLFLNVRTVSSDSSVSLYDRQLFDQSSSVILNPDTSDPSIVL 78


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 200 YLVIFLTSMQILGLLVSSVKQI-YLLLSSNISPKRAMRLSIILINVVKNI 54
           Y + F  S  + G    S++QI YL+ S N+SP    RL   L  + ++I
Sbjct: 146 YRLCFTLSAFLSGNYKESLEQIQYLISSCNLSPLVVSRLISFLPRICEHI 195


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 118 DESSKYICLTLDTSKPRICMLVKKITRYYIYQWNLDRKVLSKGRNKH 258
           D+ ++YI  +  T  P   M   + TR   Y  NLD++  SK  NKH
Sbjct: 80  DDDTEYISDST-TDLPSAAMA--RGTRQLSYNENLDQRSFSKTPNKH 123


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 197 LVIFLTSMQILGLLVSSVKQIYLLLSSNISP 105
           ++IFL + +  GL +  + Q+YL   SNI P
Sbjct: 448 IIIFLFAKETKGLTLEEINQLYL---SNIKP 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,633
Number of Sequences: 5004
Number of extensions: 52997
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)