Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0600
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    33   0.28 
U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 324 NLGRRSLNLRGSNPLPKNTTTRMLVPTFRQNL 229
           NL ++ +N R    LP++T +R  VP F QN+
Sbjct: 355 NLAKKKINFRSRKRLPQSTKSRNAVPDFSQNV 386


>U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical
           protein C10A4.9 protein.
          Length = 153

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 169 ICMLVKKITRYYIYQWNLDRKVLSKGRNKHSRCSVFR 279
           + +LV  I   Y+Y WN D   +S G N  + C+ ++
Sbjct: 16  VALLVLVILDAYLYAWNTDDNGVSLGSNSLASCAPWK 52


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/52 (21%), Positives = 33/52 (63%)
 Frame = -3

Query: 200 YLVIFLTSMQILGLLVSSVKQIYLLLSSNISPKRAMRLSIILINVVKNIYVV 45
           Y+++F++ +  + +++S  K  +L  +   +P+R + + II++ +VK + ++
Sbjct: 192 YILLFISVLLYIPVIISVRKLSHLQSAQLNNPQRYIMIQIIVVFIVKIVNII 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,820
Number of Sequences: 27780
Number of extensions: 283801
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)