Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0599
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   4.4  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   4.4  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   7.7  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 80  VPNREEASERSPSPRTVVPKMAHRHQPSEKDCGAISEGKLHTDF 211
           +P REE S + P  +  V      + PS+K  G IS  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 609 IRKYMKSASERYFDKAMRHDNRLI 680
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 384 PMICKRSKMSLRNKVTLYK 440
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,871
Number of Sequences: 5004
Number of extensions: 58946
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)