Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0599
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537...    29   3.4  
01_07_0206 + 41990251-41992032,41992131-41992361                       28   6.0  
01_05_0723 + 24607800-24608357,24609616-24610158,24610281-246106...    28   6.0  
11_03_0049 - 9318578-9319312                                           28   7.9  

>07_01_0711 +
           5374717-5374992,5375022-5375277,5375317-5375384,
           5375556-5376287,5377013-5377270
          Length = 529

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +2

Query: 86  NREEASERSPSPRTVVPKMAHRHQPSEKDCGAISEGKLHTDFLPY*EEESHTPDYSL*SI 265
           + +E+S RS    ++    A RH  ++ D   + + +   +++   +E +HT +YSL  +
Sbjct: 452 HHDESSARSSVDISMEDTEAPRHLLNDTDLDLVDDRERQANYMLSDQEYAHTREYSLELL 511

Query: 266 HTLGQE 283
             +G +
Sbjct: 512 KKIGMD 517


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  YSSRNKSLIAKKLQSAALALGQWFRKWR 146
           Y + +K+ ++K+ + + L LGQW   WR
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWR 299


>01_05_0723 +
           24607800-24608357,24609616-24610158,24610281-24610697,
           24610804-24611244
          Length = 652

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 130 GSENGA*TSTQRKGLRCYFRGEAPHGFPPVLGGGISHPRLLSLVNP------YPGPRRSS 291
           G+   A T+++  G+  +  G AP   PP+  GG    RLL++  P       PGP   +
Sbjct: 21  GAAGAALTTSRSIGVFPFQFGAAPLRTPPLPDGGGDGSRLLTVAGPDDEPDDAPGPEMPA 80

Query: 292 TWALPSTH 315
               P  H
Sbjct: 81  ARRRPDAH 88


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 3   DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 134
           D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,668,104
Number of Sequences: 37544
Number of extensions: 449950
Number of successful extensions: 1249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)