Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0599
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 44 8e-05
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 39 0.004
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 39 0.004
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 32 0.33
Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 31 0.76
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 30 1.8
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 30 1.8
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 30 1.8
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 30 1.8
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 4.1
AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical... 28 7.1
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 44.4 bits (100), Expect = 8e-05
Identities = 43/168 (25%), Positives = 71/168 (42%)
Frame = +3
Query: 39 FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKRTAVLFQXXXXXXXXXX 218
FADDT +Y +S K+ LQSA A+ W + ++ +N +K V
Sbjct: 108 FADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHVTVGKRRIDFKYHL 166
Query: 219 XXXXNLTPPITLFSQSIPWAKKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICK 398
IT + LG + + F H + + A F L ++ K
Sbjct: 167 DGYPIERKAIT------------RDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---K 211
Query: 399 RSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCR 542
S + + + LYKT IRP + Y +VV + ++ T++S+Q+ F R
Sbjct: 212 YSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +3
Query: 294 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 473
LG + + F H K + A F L ++ +K + + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206
Query: 474 VVFAHAARTHIDTLQSLQSRFCR 542
VV + ++ ++S+Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 294 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 473
LG+ D+ +TF+PHIK + + L R ++ + L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254
Query: 474 VVFAHAARTHIDTL 515
V++ + + TL
Sbjct: 255 AVYSPKPSSSLSTL 268
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 32.3 bits (70), Expect = 0.33
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 285 VKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMT 464
V+ LG+ D + F HI V + + R ++ S S + LYKT + P+M
Sbjct: 976 VRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMN 1032
Query: 465 YASVVFA 485
Y S V+A
Sbjct: 1033 YCSEVYA 1039
>Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical
protein R05A10.3 protein.
Length = 387
Score = 31.5 bits (68), Expect = 0.58
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Frame = +2
Query: 80 VPNREEASERSPSPRTVVPKMAHRHQPSEKDCGAISEGKLHTDFLPY*EEESHTPDYSL* 259
+ N E P+ +PK + +P + + G+ S+ TD Y + DY
Sbjct: 127 INNMETGVPEGPTKEPYMPKPITKPKPGQNNSGSFSDSTDFTDSSDYTRYTDGSTDYPGG 186
Query: 260 SIHTLG--QEGQVPGRYPRRIDDIPPAY 337
S G + + G I+ IPP Y
Sbjct: 187 STDVPGGSTDSPIDGSTDLPIESIPPVY 214
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 31.1 bits (67), Expect = 0.76
Identities = 24/112 (21%), Positives = 43/112 (38%)
Frame = +3
Query: 3 DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKRTAVL 182
D+P T L +ADD ++ + A+K+Q + ++ ++ + I+ K T +
Sbjct: 550 DMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTV 609
Query: 183 FQXXXXXXXXXXXXXXNLTPPITLFSQSIPWAKKVKYLGVTLDASMTFRPHI 338
F P I IP K LG+TL+ + H+
Sbjct: 610 FS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 245 RGCEIPPPNTGGNPCGASPLK*HRSP 168
R C +PPP GG PC L P
Sbjct: 296 RACTVPPPMNGGQPCFGDDLMTQECP 321
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 245 RGCEIPPPNTGGNPCGASPLK*HRSP 168
R C +PPP GG PC L P
Sbjct: 324 RACTVPPPMNGGQPCFGDDLMTQECP 349
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 245 RGCEIPPPNTGGNPCGASPLK*HRSP 168
R C +PPP GG PC L P
Sbjct: 296 RACTVPPPMNGGQPCFGDDLMTQECP 321
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 245 RGCEIPPPNTGGNPCGASPLK*HRSP 168
R C +PPP GG PC L P
Sbjct: 296 RACTVPPPMNGGQPCFGDDLMTQECP 321
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 354 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 533
RA + M+C+R SL++++ K C R M Y + + + +T D + S SR
Sbjct: 37 RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94
Query: 534 FCRL-AVGAPWFVRN 575
L +VG+P + N
Sbjct: 95 SSNLSSVGSPQSLAN 109
>AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical
protein Y47G6A.4 protein.
Length = 627
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/86 (27%), Positives = 37/86 (43%)
Frame = +2
Query: 83 PNREEASERSPSPRTVVPKMAHRHQPSEKDCGAISEGKLHTDFLPY*EEESHTPDYSL*S 262
PN ++ S P+PR + P+ A R PS+ A SE K + F E + DY
Sbjct: 540 PNVQQESVVVPAPRRLSPQRAPR--PSQNSPNAYSERKSFSAF----PSEDPSEDYETPI 593
Query: 263 IHTLGQEGQVPGRYPRRIDDIPPAYK 340
I + + +Y +D + P K
Sbjct: 594 ISHIMNRNEA-DQYFNILDSVKPGQK 618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,406
Number of Sequences: 27780
Number of extensions: 345161
Number of successful extensions: 903
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -