Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0599
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    32   0.31 
At2g45480.1 68415.m05656 expressed protein                             29   2.2  
At2g17787.1 68415.m02061 expressed protein                             28   6.6  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    27   8.7  

>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 554 PDS*PAKAGL*GLEGVYVCAGRVSEHHTRVSHDGPYASFIKCHLVPKGH 408
           PD  PA AG+   EG  +C G   E +   SH G + + + C  +   H
Sbjct: 361 PDIHPASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407


>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
 Frame = +3

Query: 465 YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPW--------FVRNVDLHDDLGLESIRKY 620
           ++S + ++   THIDTL++  +R CR   G  W        F +  + H   G +  RK 
Sbjct: 70  HSSSLLSNKGVTHIDTLETEPTR-CRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKL 128

Query: 621 MKSASERYFDKAMRHDN 671
           ++S+SE     + ++DN
Sbjct: 129 VESSSE-VASSSTKYDN 144


>At2g17787.1 68415.m02061 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 146 HRHQPSEKDCGAISEGKLHTDFLPY*EEESHTPDYSL 256
           HRH+   KD GAI+ GKL +  +   E+   T +  L
Sbjct: 55  HRHKRRRKDEGAIASGKLVSSEVELLEKSCQTVELEL 91


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 275 PGYGLTKESNRGCEIPPPNTGGNP 204
           P YG   ++N G   PP N GG P
Sbjct: 296 PPYGAPPQNNMGGPRPPQNYGGTP 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,267
Number of Sequences: 28952
Number of extensions: 330302
Number of successful extensions: 807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)