Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0597
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.2  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   5.5  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.5  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    25   9.6  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 287 SLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEFSCI*IFVVL 430
           S    SD +K +  + +N      P WR+    +A SE SC+ ++ +L
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLL 361


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +2

Query: 50  CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWVVP 175
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 361
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 330  YFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 437
            + K+   T ++   R+ F   +     YE LSSW+R
Sbjct: 965  FTKVITKTFSIKSIRLQFLSLIIYEITYEQLSSWYR 1000


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  QDTFEHRHFERTLRSVETHPGPLLSEG 132
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 224 EYERVTRNASTRRITSAAPPTQCD*CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCS 48
           E ER TR +S+  +T        + C  C +   R   G V  +     +CR  N+ CS
Sbjct: 3   EVER-TRQSSSSLLTFKRKRA-LEACDSCRKQKTRCLAGSVEDENRACLRCRSLNMDCS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,947
Number of Sequences: 5004
Number of extensions: 35853
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)