Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0597
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0510 + 24420402-24422582 31 0.60
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 30 1.4
02_03_0144 + 15694766-15694883,15694980-15697612 29 3.2
01_06_0542 + 30096277-30096340,30096444-30096529,30096810-300969... 29 3.2
05_03_0579 - 15714195-15714887 27 7.4
02_05_0817 + 31994241-31995908 27 7.4
12_01_0107 - 843820-846335,846400-846511 27 9.8
05_07_0361 + 29555446-29556138 27 9.8
04_04_0036 - 22307328-22308026 27 9.8
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 27 9.8
>11_06_0510 + 24420402-24422582
Length = 726
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 155 D*CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 30
D CF + P+D+ GC S + SKC RC S S + DA+
Sbjct: 504 DLCFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 26 LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC-IKNINHIAWVVPRS*SVALT 199
L+A+ S +NC + + +IS H G H + + AGC ++ + H+ P+ A+
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGCFVRFLGHLTGFSPK--DKAVD 782
Query: 200 RSALRVRTRRYV 235
RS ++ YV
Sbjct: 783 RSVEKLSNAFYV 794
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 224 EYERVTRNASTRRITSAAPPTQCD*CF-LCSRPSD 123
E +RV R R ++ A+P T C+ CF L PSD
Sbjct: 732 EQKRVVRKHILRPVSGASPFTVCNSCFNLVQMPSD 766
>01_06_0542 +
30096277-30096340,30096444-30096529,30096810-30096934,
30097405-30097513,30097865-30097981,30098066-30098149,
30098795-30098914,30099416-30099502,30100160-30100237
Length = 289
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 104 HIQDHSCLRAGCIKNINHIAWVVPRS*SVALTRSALR 214
HI S L G + N+N IA VPR VA R+ LR
Sbjct: 183 HIGSFSFLGGGSVFNLNQIAQDVPRYMMVAGDRAELR 219
>05_03_0579 - 15714195-15714887
Length = 230
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 196 QRDGSRARHHPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVD 68
QR G+ R HPR V++ A G T V +PR A R +D
Sbjct: 148 QRGGTLPRQHPRQVLS---ATGRPTVVSSSNAPRIAPIWRPID 187
>02_05_0817 + 31994241-31995908
Length = 555
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 165 GWCRARDPSR 194
GWCRARDP R
Sbjct: 264 GWCRARDPKR 273
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 224 EYERVTRNASTRRITSAAPPTQCD*CF-LCSRPSD 123
E +R R + R ++ A+P T C+ CF L PSD
Sbjct: 693 EQKRAVRKSILRSLSGASPFTICNGCFNLVQVPSD 727
>05_07_0361 + 29555446-29556138
Length = 230
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 196 QRDGSRARHHPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVD 68
QR G+ R HPR V++ A G T V +PR A R +D
Sbjct: 148 QRGGTPLRQHPRQVLS---APGRPTVVSSSNAPRIAPIWRPID 187
>04_04_0036 - 22307328-22308026
Length = 232
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 134 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 36
RP R G + +R V+ CRC+ C HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -2
Query: 143 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 21
+C P + S G ++ D + S+C CS S S+H DA A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,152
Number of Sequences: 37544
Number of extensions: 239013
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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