Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0597
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                32   0.35 
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                29   1.9  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   4.3  
SB_29642| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71)                  27   7.6  

>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 82  RTLRSVETHPGPLLSEGRLHKKH*SHCVGGAALVIRRV 195
           +T+R V+T P  L +  RLH  H +HC     L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  RTLRSVETHPGPLLSEGRLHKKH*SHCVGGAALVIRRV 195
           +TLR V+T P  L +  R H+ H +HC       +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 318 MFYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 437
           + +C  K+F+I SNL    ++ +   ++SR     S WF+
Sbjct: 147 LVFCLTKVFLIESNLPALDIVKNKIDSASRYLHVFSKWFQ 186


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 62  LNIDISNAHCGPWRHIQDHSCLRAGCIKN 148
           L +D+ NA  GPW  I+ H C +  C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313


>SB_29642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 539 PLEXXXXXFYNVSLRTVVRSSILNND*YNVNNRI-TKPRRQKFIYTRT 399
           PLE      Y  +L    R ++LN   Y+ N ++  +  RQK  Y RT
Sbjct: 104 PLELLNSRIYQSNLPATSRHALLNKPDYDANVKLQARQDRQKSYYDRT 151


>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 539 PLEXXXXXFYNVSLRTVVRSSILNND*YNVNNRI-TKPRRQKFIYTRT 399
           PLE      Y  +L    R ++LN   Y+ N ++  +  RQK  Y RT
Sbjct: 808 PLELLNSRIYQSNLPATSRHALLNKPDYDANVKLQARQDRQKSYYDRT 855


>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 95  PWRHIQDHSCLRAGCIKNI 151
           PWR+  DH CL+   I N+
Sbjct: 5   PWRNAADHHCLKTAIIFNV 23


>SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71)
          Length = 843

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 230 NDEYERVTRNASTRRITSAAPPTQCD*CFLCSRPSDRSGP 111
           +DE E+      TR  +++  P     CFLC+    R  P
Sbjct: 178 DDEDEQAVTRIYTRSCSASTLPNDLPTCFLCNETGTRRNP 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,511,928
Number of Sequences: 59808
Number of extensions: 295080
Number of successful extensions: 833
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)