Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0596
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    27   0.16 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.9  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 200 GGVCAPTTEWHARSDVRRATPFEEH 126
           GGVC P T WH   D R   P+ +H
Sbjct: 478 GGVCDPYTPWHTFYDYR---PWVQH 499


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 693  YHSVYWVGVCNFQRLR*EGSHVVPPSQNGAAMPTVD 586
            YH   WVG  + + +R +  ++      GA   T+D
Sbjct: 933  YHGDQWVGFEDIKSVRDKAEYIKTKGFGGAVAWTID 968


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 613 LRRRHDMRTLSS*PLEITYPDPVDRMVNRRRRPKH 717
           LRR  D  T  + P E+   D    M+ R+R+  H
Sbjct: 325 LRRPSDGATSEALPFELLPLDSEPGMLKRKRQKYH 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,584
Number of Sequences: 336
Number of extensions: 4035
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)