Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0596
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421...    29   2.9  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    29   2.9  
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15...    29   3.9  
06_01_0022 - 218860-219053,219707-220010                               29   3.9  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   3.9  
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185...    29   3.9  
03_05_0431 + 24221881-24224586                                         29   5.1  
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    28   8.9  

>07_01_0567 -
           4214196-4214351,4214539-4214845,4215005-4215069,
           4215406-4215471,4215594-4215639,4215671-4216200
          Length = 389

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 570 DSFSKYLQSASLRHFEKAARHENPL 644
           D+F +Y+ + SLR+F     HE P+
Sbjct: 167 DTFDRYVSAGSLRYFLNCVSHEQPM 191


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +3

Query: 447 FAHAARTNLKSLQVIQSRFCRIAV-GAPWFLRNVDLHDDLELDSFSKYLQSASLRHF--E 617
           F   A   L +    +++F ++AV GAP +LR VDL      D     LQ     HF   
Sbjct: 103 FRKNALAALAAASSSKAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIR 161

Query: 618 KAARHENPLI--VAAGNYIP 671
           K    E  L+  V+   Y+P
Sbjct: 162 KLGNEEMKLVDAVSGNEYVP 181


>11_01_0022 +
           151233-151515,152632-152852,153579-153656,154558-154674,
           155970-156316,156504-157032
          Length = 524

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 488 NLKGFQVGAGCVSEHYACIR 429
           N   +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367


>06_01_0022 - 218860-219053,219707-220010
          Length = 165

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 651 AAGNYIPRPSRPNGKPSTSPKAR 719
           AA +Y+PRP  PN  PS    AR
Sbjct: 14  AAPSYVPRPRAPNPSPSAPAPAR 36


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 12  YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 146
           +S     L+HR L  A    VA   +  R WR  + P + AA L  RGR
Sbjct: 89  FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137


>03_01_0238 +
           1854070-1854344,1854621-1854712,1854852-1855045,
           1855529-1855568,1855734-1855815,1856972-1857049,
           1857144-1857269,1857544-1857665,1858018-1858057,
           1858250-1858324,1858414-1858585
          Length = 431

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   AIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSMP 173
           AI   CR      RRL  A A   +   +WRID N   +AA    RGR     ++MP
Sbjct: 32  AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGNKPAAAA----RGRRRASLTAMP 84


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 325 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 230
           AR+RTVF WG  +V  +  + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207


>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 38  SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHATP 178
           SS   DRS+ P    P+  +R  PH + SG+ +K S S+ + +   P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,533,828
Number of Sequences: 37544
Number of extensions: 535721
Number of successful extensions: 1512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)