Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0596
         (737 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha prot...    35   0.27 
CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.                35   0.27 
BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directe...    35   0.27 
BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directe...    35   0.27 
DQ345517-1|ABC69270.1|  140|Homo sapiens stromal cell-derived fa...    31   4.3  

>L24559-1|AAA16459.1|  598|Homo sapiens DNA polymerase alpha
           protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.27
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 392 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 493
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>CR456737-1|CAG33018.1|  598|Homo sapiens POLA2 protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.27
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 392 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 493
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC002990-1|AAH02990.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.27
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 392 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 493
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>BC001347-1|AAH01347.1|  598|Homo sapiens polymerase (DNA directed),
           alpha 2 (70kD subunit) protein.
          Length = 598

 Score = 35.1 bits (77), Expect = 0.27
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 392 GNSLQNLYTPRHDVCKRSVRSRSPHQLEIPSGYS 493
           G+  + + TP   + KRSV +RSPHQL  PS +S
Sbjct: 119 GSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152


>DQ345517-1|ABC69270.1|  140|Homo sapiens stromal cell-derived
           factor 1 delta protein.
          Length = 140

 Score = 31.1 bits (67), Expect = 4.3
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +3

Query: 450 AHAARTNLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSFSKYLQSASLRHFEKAAR 629
           +H AR N+K L+++ +  C + + A     N  +  D +L    +YL+ A L +   AA 
Sbjct: 37  SHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKA-LNNLISAAP 95

Query: 630 HENPLIVAAGNYIPRPSR 683
               +I  A    P P R
Sbjct: 96  AGKRVIAGARALHPSPPR 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,516,330
Number of Sequences: 237096
Number of extensions: 2670524
Number of successful extensions: 7070
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7070
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)