Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0596
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   5.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   5.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   5.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   5.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 732 RIGNYVLWATSTVYHSVYWVGV 667
           R+ +Y +W    V HSV  VG+
Sbjct: 109 RVKSYEIWVPDIVMHSVTSVGI 130


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  WFRKWRIDINPTKSAAVLFKRG-RPPNITSSMPLRSRRANTS 200
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 841 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 882


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  WFRKWRIDINPTKSAAVLFKRG-RPPNITSSMPLRSRRANTS 200
           W +  +I++NP+ +  V  KR   P  + + + + S  A+ S
Sbjct: 837 WLKGGKIELNPSTNYRVTVKREVTPDGVIAQLQISSAEASDS 878


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 180 SRRANTSAVSPITLFGQPIPWV 245
           ++ A T  +SP  L    IPWV
Sbjct: 69  AKGAFTGEISPAMLLDNGIPWV 90


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 PLIVAAGNYIPRPSRP 686
           P+ V  GN++PRP  P
Sbjct: 118 PVPVYYGNFLPRPMGP 133


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 PLIVAAGNYIPRPSRP 686
           P+ V  GN++PRP  P
Sbjct: 121 PVPVYYGNFLPRPMGP 136


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 PLIVAAGNYIPRPSRP 686
           P+ V  GN++PRP  P
Sbjct: 121 PVPVYYGNFLPRPMGP 136


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 PLIVAAGNYIPRPSRP 686
           P+ V  GN++PRP  P
Sbjct: 121 PVPVYYGNFLPRPMGP 136


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 639 PLIVAAGNYIPRPSRP 686
           P+ V  GN++PRP  P
Sbjct: 121 PVPVYYGNFLPRPMGP 136


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 671 GYVISSGYDERVLMSCRLLKMAQRC 597
           GY  +S +D +V+ + ++LKM   C
Sbjct: 210 GYTNNSKWDFKVIKATKVLKMYACC 234


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 699 TVYHSVYWVGVCN 661
           TV+  ++W+G CN
Sbjct: 42  TVFSVLFWLGYCN 54


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 699 TVYHSVYWVGVCN 661
           TV+  ++W+G CN
Sbjct: 490 TVFSVLFWLGYCN 502


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 595 RHRCAILRRRHDMRTLSS*PLEITYPDPVDR 687
           RHR   +   +D  + +S  L +T P  +DR
Sbjct: 33  RHRDFTVAESYDASSSNSDSLSMTIPPSIDR 63


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 665 VISSGYDERVLMSCRLLKMAQRCRL*ILTKRVELQVVVEIHIPKEPRR 522
           ++ +G   R+L   +LL + +  RL  L + V     V I + ++P R
Sbjct: 198 ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPER 245


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +2

Query: 35  ASSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHH 160
           A++A    ++  G +  E   RH   +     LQ  +  +HH
Sbjct: 119 ATAAATATTTATGLIKQETLQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,497
Number of Sequences: 438
Number of extensions: 5092
Number of successful extensions: 63
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)