Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0596
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44330.1 68418.m05428 male sterility MS5 family protein simil...    31   0.80 
At1g31990.1 68414.m03934 expressed protein                             31   1.1  
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r...    28   5.6  
At3g15150.1 68416.m01916 expressed protein                             28   7.4  

>At5g44330.1 68418.m05428 male sterility MS5 family protein similar
           to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 469

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 224 KESDGTNGGGVCAPTTEWHARSDVRRATPFEEHR 123
           +ES G  GGG   P   WH    V  A P  E +
Sbjct: 4   RESRGAKGGGFLTPPPSWHTTRRVYIAMPISERK 37


>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 248 EGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL 361
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein ;
           contains Pfam profile PF04564: U-box domain
          Length = 1033

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 31/116 (26%), Positives = 46/116 (39%)
 Frame = +3

Query: 273 LDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA 452
           LDR +T+R   K VR      L  L        K  +   +T+  +C+  ++  +     
Sbjct: 370 LDRYLTYRS--KDVRFELLKFLRTLADEETDDGKEMIVKTITM--SCVIKLLGSSHQPVR 425

Query: 453 HAARTNLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLELDSFSKYLQSASLRHFEK 620
           HAA+  L  L   Q    +I       L  V    + ELDSF+       LR+ EK
Sbjct: 426 HAAQALLLELSKSQHACEKIGTARGAILMLVTAKYNRELDSFASETSDQILRNLEK 481


>At3g15150.1 68416.m01916 expressed protein
          Length = 249

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 62  SHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHATP**A--RKHLRR*SHHSLWPAH 235
           +H  T +  VANR+QP E+ +   +K    E     ATP       HL R    ++W  H
Sbjct: 73  NHRSTAIQSVANRYQPVEQLTD-FKKLLDDEFTKLKATPSSVPQNDHLMRQFREAVWNVH 131

Query: 236 SVG 244
             G
Sbjct: 132 HAG 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,163
Number of Sequences: 28952
Number of extensions: 378901
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)