Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0595
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    29   0.88 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   3.6  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   8.2  

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 155 KQVPNREEASERSPSPRTVVPKMAHKHQPSEKYCGALSEGKLHTDFLP 298
           K   NR E  +R+ + +   PK  HK    ++  GA  +  ++ D LP
Sbjct: 124 KDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLP 171


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 161 VPNREEASERSPSPRTVVPKMAHKHQPSEKYCGALSEGKLHTDF 292
           +P REE S + P  +  V      + PS+K  G +S  K++  F
Sbjct: 105 LPEREEHSSQLPPAQNQVLPFQSLNAPSKKLRGRISLSKIYQFF 148


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 465 PMICKRSKMSLRNKVTLYK 521
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,878
Number of Sequences: 5004
Number of extensions: 67550
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)