Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0595
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   3.7  
06_03_0088 + 16469006-16469189,16469664-16469797                       29   4.9  
01_07_0206 + 41990251-41992032,41992131-41992361                       29   4.9  
01_06_1724 - 39452858-39454309                                         28   6.5  
11_03_0049 - 9318578-9319312                                           28   8.6  
03_05_0930 + 28908216-28908587                                         28   8.6  

>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 368 DLPGPGYGLTKESNRGCEIPP-PNTGGNPCGASP 270
           D P PG       N  C +PP P+ GG   GA P
Sbjct: 9   DQPSPGRSPNPNLNLPCPLPPIPSCGGGGGGAGP 42


>06_03_0088 + 16469006-16469189,16469664-16469797
          Length = 105

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 392 IQGNAQVLDLPGPGYGLTKESNRGCEIPPPNTGGNP 285
           ++ NA +L  P  G  +T +++  C   PP  GGNP
Sbjct: 39  LEDNAIILVHPSRGQAVTSDTS--CGTKPPKLGGNP 72


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 144 YSSRNKSLIAKKLQSAALALGQWFRKWRINI 236
           Y + +K+ ++K+ + + L LGQW   WR  I
Sbjct: 272 YVNMDKTWLSKQAEMSTLQLGQWKPSWRHRI 302


>01_06_1724 - 39452858-39454309
          Length = 483

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 368 QVPGRYPGCIDDIPPAYKISP*PCRVY 448
           QVPG++P CI     AY++ P PC  Y
Sbjct: 333 QVPGQHPPCI-----AYQMPPPPCLAY 354


>11_03_0049 - 9318578-9319312
          Length = 244

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 84  DIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWF 215
           D+P +PP ++A    D   Y   R+K ++  +    +   G W+
Sbjct: 148 DLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWY 191


>03_05_0930 + 28908216-28908587
          Length = 123

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 326 RGCEIPPPNTGGNPCGASPLKE 261
           RG + PP +T GNPC  S L +
Sbjct: 25  RGQQSPPSSTRGNPCPTSALAD 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,103,346
Number of Sequences: 37544
Number of extensions: 530039
Number of successful extensions: 1524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)