Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0595
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 57 1e-08
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 41 8e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 41 8e-04
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 39 0.004
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 39 0.004
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 36 0.029
Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical pr... 30 1.4
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 29 2.5
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 29 2.5
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 29 2.5
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 29 2.5
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 4.4
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 57.2 bits (132), Expect = 1e-08
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 2/208 (0%)
Frame = +3
Query: 6 SSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKK 179
SS + T GVPQG NDI P +A FADDT +Y +S K+
Sbjct: 68 SSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLY-ASTPKTESENN 126
Query: 180 LQSAALALGQWFRKWRININPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWA 359
LQSA A+ W + ++ +N +K+ V + L I
Sbjct: 127 LQSALDAVVDWTKGSKLTLNQSKTVHV------------TVGKRRIDFKYHLDGYPIERK 174
Query: 360 RKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPV 539
+ LG + + F H + + A F L ++ K S + + + LYKT IRP
Sbjct: 175 AITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---KYSTSNKKLMILLYKTFIRPR 231
Query: 540 MTYASVVFAHAARTHIDTLQSLQSRFCR 623
+ Y +VV + ++ T++S+Q+ F R
Sbjct: 232 LEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 41.1 bits (92), Expect = 8e-04
Identities = 31/133 (23%), Positives = 51/133 (38%)
Frame = +3
Query: 21 LTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALA 200
L GVPQG D+P T L +ADD ++ + A+K+Q
Sbjct: 529 LLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDE 588
Query: 201 LGQWFRKWRININPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLG 380
+ ++ ++ ++I+ KST +F P I IP K LG
Sbjct: 589 IAKYLKERGMSISAEKSTVTVFS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLG 640
Query: 381 VTLDASMTFRPHI 419
+TL+ + H+
Sbjct: 641 ITLNTMTGTKDHV 653
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 2/185 (1%)
Frame = +3
Query: 18 PLTAGVPQGXXXXXXXXXXXXND--IPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSA 191
P+++GVPQG N+ I +P +++ FADD ++++ + ++I Q++
Sbjct: 876 PISSGVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFHT--DPTII----QNS 929
Query: 192 ALALGQWFRKWRININPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVK 371
+ W + + + P KS A+L +TP T V+
Sbjct: 930 IDIIVSWSKLNELPLAPTKS-ALLALGTRNKNQSYSVDGVPITPSST-----------VR 977
Query: 372 YLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYA 551
LG+ D + F HI V + + R ++ S S + LYKT + P+M Y
Sbjct: 978 DLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYC 1034
Query: 552 SVVFA 566
S V+A
Sbjct: 1035 SEVYA 1039
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +3
Query: 375 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 554
LG + + F H K + A F L ++ +K + + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206
Query: 555 VVFAHAARTHIDTLQSLQSRFCR 623
VV + ++ ++S+Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +3
Query: 375 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 554
LG+ D+ +TF+PHIK + + L R ++ + L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254
Query: 555 VVFAHAARTHIDTL 596
V++ + + TL
Sbjct: 255 AVYSPKPSSSLSTL 268
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -3
Query: 88 ISLTNKLNRRGERTEPCGTPAVRGRGEER 2
ISLTN GERT+PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>Z82280-3|CAB05265.1| 387|Caenorhabditis elegans Hypothetical
protein R05A10.3 protein.
Length = 387
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Frame = +2
Query: 161 VPNREEASERSPSPRTVVPKMAHKHQPSEKYCGALSEGKLHTDFLPY*EEESHTPDYSL* 340
+ N E P+ +PK K +P + G+ S+ TD Y + DY
Sbjct: 127 INNMETGVPEGPTKEPYMPKPITKPKPGQNNSGSFSDSTDFTDSSDYTRYTDGSTDYPGG 186
Query: 341 SIHTLG--QEGQVPGRYPGCIDDIPPAY 418
S G + + G I+ IPP Y
Sbjct: 187 STDVPGGSTDSPIDGSTDLPIESIPPVY 214
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 326 RGCEIPPPNTGGNPC 282
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 326 RGCEIPPPNTGGNPC 282
R C +PPP GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 326 RGCEIPPPNTGGNPC 282
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 326 RGCEIPPPNTGGNPC 282
R C +PPP GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +3
Query: 435 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 614
RA + M+C+R SL++++ K C R M Y + + + +T D + S SR
Sbjct: 37 RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94
Query: 615 FCRL-AVGAPWFVRN 656
L +VG+P + N
Sbjct: 95 SSNLSSVGSPQSLAN 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,529,028
Number of Sequences: 27780
Number of extensions: 403348
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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