Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0595
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25170.1 68417.m03624 expressed protein                             30   1.8  
At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    30   1.8  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    30   1.8  
At3g15000.1 68416.m01897 expressed protein similar to DAG protei...    29   4.1  
At3g19515.1 68416.m02473 expressed protein                             28   7.2  

>At4g25170.1 68417.m03624 expressed protein
          Length = 344

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 295 PVLGGGISHPRLLSLVNPYPGPGRSSTWALPWMHR*HS 408
           P  GGG   P    +V+  P  G  S W  P MH  HS
Sbjct: 156 PENGGGNQSPIATGMVHQVPSFGSDSDWMEPSMHLCHS 193


>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 623 PAKAGL*RLEGVYVCAGRVSEHHTRVSHDGPYASFVKCHLVPKGH 489
           PA AG+   EG  +C G   E +   SH G + + V C  +   H
Sbjct: 365 PASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -2

Query: 473 NHGVESTENKRGTVTD*FYMRAECHRCIQGNAQVLDLPGPGY--GLTKESNRGCEIPPPN 300
           NH    +  K  ++T  ++ R+E   CI G     DL G G   G+   +N G  +    
Sbjct: 527 NHSEVDSSGKSASITGGYFYRSETDPCIAGRYVYADLYGNGVWAGIETPANSGSFVTKRT 586

Query: 299 TGGNPCGA-SPLK 264
           T    C + SP+K
Sbjct: 587 TFS--CASDSPMK 597


>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
           (required for chloroplast differentiation and palisade
           development) GB:Q38732 [Antirrhinum majus]
          Length = 395

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 362 PGPGYGLTKESNRGCEIPPPNTGGNP 285
           P P YG    +N     PPPN GG P
Sbjct: 319 PPPNYGGAPPANNMGGAPPPNYGGGP 344



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 356 PGYGLTKESNRGCEIPPPNTGGNP 285
           P YG   ++N G   PP N GG P
Sbjct: 296 PPYGAPPQNNMGGPRPPQNYGGTP 319


>At3g19515.1 68416.m02473 expressed protein
          Length = 507

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 655 FLTNHGAPTANLQKRDCKDWR 593
           ++  HG P    +K DCKDW+
Sbjct: 215 YIKQHGIPREICKKFDCKDWQ 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,524
Number of Sequences: 28952
Number of extensions: 385175
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)