Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0592
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   8.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   8.4  

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 293 KMLCNSFTAAVPKCHTFFLFY*TCYSFTVEVNREQLLSTYFIGKIGTRLRDFNTDAS 123
           K + +SF + +     FFL Y T YSF V + +  L + +F     TR++   + +S
Sbjct: 45  KSIRDSFLSQLENILCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSSSS 101


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 212 TVEVNREQLLSTYFIGKIGTRLRDFNTDASQDTNAPDVLSCRL 84
           T +V R  L ST F+         +NTDAS   ++ D  SC L
Sbjct: 158 TYDVRRPNLGSTSFVEMSSALSNIYNTDASDGDSSDD--SCLL 198


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +3

Query: 444 SNAFRFEQWGSRYNYTETLELIS--QGGWRIY 533
           S A+ + QW   YN T  +  IS     W++Y
Sbjct: 447 SAAYAWSQWKGLYNLTLNMSYISFVMAAWKLY 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,675
Number of Sequences: 5004
Number of extensions: 57480
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)