Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0592
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    31   0.94 
01_01_0654 + 4990513-4990597,4991806-4991878,4991959-4992058,499...    29   3.8  
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    28   8.7  

>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 2   FKNTKIAYNRNTAINADLLNYQYVTKF*AYRIRRPVHLYLAMHRC*NLAGG 154
           + + K+    +   NA +  YQ V +  +  +RRPVH + A HR  N + G
Sbjct: 437 YLDPKVESQDSNGDNASITKYQKVGEQGSIAVRRPVHTFWANHRGGNQSEG 487


>01_01_0654 +
           4990513-4990597,4991806-4991878,4991959-4992058,
           4992719-4992868
          Length = 135

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 586 ASPPISAIKKLKLELFRCSDTIINAETWSSTTDGLQQRVGIC-PQRAGS 729
           A   + A + ++  +F   + I +++ W   + G  +R GIC PQRAG+
Sbjct: 18  ACESLKAKEPIEQTIFFVGEKIRSSQDWLLISKGRTKRKGICGPQRAGT 66


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 117 ILRCIGVEISQAGTNFANEIRT*QLFTIDFHGE 215
           I RC GV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,449,687
Number of Sequences: 37544
Number of extensions: 382190
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)