Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0590
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    31   0.16 
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    28   1.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   2.6  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/86 (20%), Positives = 41/86 (47%)
 Frame = +3

Query: 42  YIQSVEICAVLITMAGLNIAEWTADQVAEWMSGLDACGAQYVPQMRAKGLNGTRLLMLRC 221
           YI++    ++ ++    N+  W+ ++V EW+  ++A      P      + G  LL L  
Sbjct: 229 YIENRPASSLAVSEKIQNVPNWSTEEVVEWL--MNAGLGSVAPNFAENEITGEILLGLDS 286

Query: 222 DDLEYLGMHIIGHQELLLEAVEHLRN 299
           + L+ L +   G +  +L  ++ L++
Sbjct: 287 NVLKELNITSFGKRFEVLRKIQQLKD 312


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -1

Query: 277 SSKSSWCPMICMPKYSKSSHLNINNLVPFKPLARICGTYWAPHASSP 137
           S +S++ P +  P Y     +  N   PF P+       W   AS+P
Sbjct: 254 SKQSTYWPALAAPVYPSMKDVPNNPFTPFSPINPYYAKSWNHTASAP 300


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 369 KKYPSIRNMQIFYILNVYKSHNKL 440
           KKYP I   +I Y+LN+Y + N +
Sbjct: 502 KKYPGIVWERIHYVLNIYTTINSV 525


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 596 SPNINKLPKLQLANI 552
           SPNIN +P LQLA+I
Sbjct: 406 SPNINIVPPLQLADI 420


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 564 ISKYLIFLHDIELKIMYFFHLTNV 493
           I+K+L F+H I L  ++ F LT++
Sbjct: 104 INKFLDFIHGIGLPEIFHFELTDI 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,535
Number of Sequences: 5004
Number of extensions: 56165
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)